X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FAppletPDBViewer.java;h=133565c604d4ffd4dac5682fd9b3f605f57ed2a0;hb=cd574299875e128d38eadee2efb946725e07bd92;hp=587326a7c9d956e952a8ea03d4fdcc6fe65536d2;hpb=47168f025aefdaa044802bd5f8f510ffe43a4808;p=jalview.git

diff --git a/src/MCview/AppletPDBViewer.java b/src/MCview/AppletPDBViewer.java
index 587326a..133565c 100644
--- a/src/MCview/AppletPDBViewer.java
+++ b/src/MCview/AppletPDBViewer.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,21 +20,39 @@
  */
 package MCview;
 
-import java.awt.*;
-import java.awt.event.*;
-
-import jalview.appletgui.*;
-import jalview.datamodel.*;
-import jalview.schemes.*;
+import jalview.appletgui.AlignmentPanel;
+import jalview.appletgui.EmbmenuFrame;
+import jalview.datamodel.PDBEntry;
+import jalview.datamodel.SequenceI;
+import jalview.io.DataSourceType;
+import jalview.schemes.BuriedColourScheme;
+import jalview.schemes.HelixColourScheme;
+import jalview.schemes.HydrophobicColourScheme;
+import jalview.schemes.StrandColourScheme;
+import jalview.schemes.TaylorColourScheme;
+import jalview.schemes.TurnColourScheme;
+import jalview.schemes.ZappoColourScheme;
 import jalview.util.MessageManager;
 
+import java.awt.BorderLayout;
+import java.awt.CheckboxGroup;
+import java.awt.CheckboxMenuItem;
+import java.awt.Frame;
+import java.awt.Menu;
+import java.awt.MenuBar;
+import java.awt.MenuItem;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.ItemEvent;
+import java.awt.event.ItemListener;
+
 public class AppletPDBViewer extends EmbmenuFrame implements
         ActionListener, ItemListener
 {
   AppletPDBCanvas pdbcanvas;
 
   public AppletPDBViewer(PDBEntry pdbentry, SequenceI[] seq,
-          String[] chains, AlignmentPanel ap, String protocol)
+          String[] chains, AlignmentPanel ap, DataSourceType protocol)
   {
     try
     {
@@ -56,6 +74,7 @@ public class AppletPDBViewer extends EmbmenuFrame implements
 
   }
 
+  @Override
   public void actionPerformed(ActionEvent evt)
   {
     if (evt.getSource() == mapping)
@@ -64,8 +83,9 @@ public class AppletPDBViewer extends EmbmenuFrame implements
               false, null);
       Frame frame = new Frame();
       frame.add(cap);
-      jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.pdb_sequence_mapping"),
-              500, 600);
+      jalview.bin.JalviewLite.addFrame(frame,
+              MessageManager.getString("label.pdb_sequence_mapping"), 500,
+              600);
       cap.setText(pdbcanvas.mappingDetails.toString());
 
     }
@@ -125,6 +145,7 @@ public class AppletPDBViewer extends EmbmenuFrame implements
 
   }
 
+  @Override
   public void itemStateChanged(ItemEvent evt)
   {
     if (evt.getSource() == allchains)
@@ -164,26 +185,32 @@ public class AppletPDBViewer extends EmbmenuFrame implements
     zbuffer.addItemListener(this);
     charge.setLabel(MessageManager.getString("label.charge_cysteine"));
     charge.addActionListener(this);
-    hydro.setLabel(MessageManager.getString("label.hydrophobicity"));
+    hydro.setLabel(MessageManager
+            .getString("label.colourScheme_hydrophobic"));
     hydro.addActionListener(this);
     chain.setLabel(MessageManager.getString("action.by_chain"));
     chain.addActionListener(this);
     seqButton.setLabel(MessageManager.getString("action.by_sequence"));
     seqButton.addActionListener(this);
-    allchains.setLabel(MessageManager.getString("label.all_chains_visible"));
+    allchains
+            .setLabel(MessageManager.getString("label.all_chains_visible"));
     allchains.addItemListener(this);
     viewMenu.setLabel(MessageManager.getString("action.view"));
-    zappo.setLabel(MessageManager.getString("label.zappo"));
+    zappo.setLabel(MessageManager.getString("label.colourScheme_zappo"));
     zappo.addActionListener(this);
-    taylor.setLabel(MessageManager.getString("label.taylor"));
+    taylor.setLabel(MessageManager.getString("label.colourScheme_taylor"));
     taylor.addActionListener(this);
-    helix.setLabel(MessageManager.getString("label.helix_propensity"));
+    helix.setLabel(MessageManager
+            .getString("label.colourScheme_helix_propensity"));
     helix.addActionListener(this);
-    strand.setLabel(MessageManager.getString("label.strand_propensity"));
+    strand.setLabel(MessageManager
+            .getString("label.colourScheme_strand_propensity"));
     strand.addActionListener(this);
-    turn.setLabel(MessageManager.getString("label.turn_propensity"));
+    turn.setLabel(MessageManager
+            .getString("label.colourScheme_turn_propensity"));
     turn.addActionListener(this);
-    buried.setLabel(MessageManager.getString("label.buried_index"));
+    buried.setLabel(MessageManager
+            .getString("label.colourScheme_buried_index"));
     buried.addActionListener(this);
     user.setLabel(MessageManager.getString("action.user_defined"));
     user.addActionListener(this);