X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FAppletPDBViewer.java;h=8598c8d481686dbd57a6b9417b7ee3987c914226;hb=32ccffc95209f230faacf6f27394669c0dc8b271;hp=1ed4d10283499f9dc93abad33e35436b26a0e8c8;hpb=c6aaf0ef217426a5e23be7db9cbc6a8369115850;p=jalview.git

diff --git a/src/MCview/AppletPDBViewer.java b/src/MCview/AppletPDBViewer.java
index 1ed4d10..8598c8d 100755
--- a/src/MCview/AppletPDBViewer.java
+++ b/src/MCview/AppletPDBViewer.java
@@ -117,14 +117,6 @@ public class AppletPDBViewer extends Frame
             seqButton_actionPerformed();
           }
         });
-        molecule.setLabel("By Molecule");
-        molecule.addItemListener(new ItemListener()
-        {
-          public void itemStateChanged(ItemEvent e)
-          {
-            molecule_actionPerformed();
-          }
-        });
     allchains.setLabel("All Chains Visible");
     allchains.addItemListener(new ItemListener()
     {
@@ -141,7 +133,6 @@ public class AppletPDBViewer extends Frame
         coloursMenu.add(chain);
     coloursMenu.add(hydro);
     coloursMenu.add(charge);
-    coloursMenu.add(molecule);
     coloursMenu.addSeparator();
         coloursMenu.add(wire);
         coloursMenu.add(depth);
@@ -164,7 +155,6 @@ public class AppletPDBViewer extends Frame
       MenuItem chain = new MenuItem();
       MenuItem seqButton = new MenuItem();
 
-      CheckboxMenuItem molecule = new CheckboxMenuItem();
      CheckboxMenuItem allchains = new CheckboxMenuItem();
 
   public void charge_actionPerformed()
@@ -198,13 +188,6 @@ public class AppletPDBViewer extends Frame
         pdbcanvas.repaint();
       }
 
-      public void molecule_actionPerformed()
-      {
-        pdbcanvas.bymolecule = ! pdbcanvas.bymolecule;
-        pdbcanvas.redrawneeded=true;
-        pdbcanvas.repaint();
-      }
-
       public void depth_actionPerformed()
       {
       pdbcanvas.depthcue = ! pdbcanvas.depthcue;
@@ -224,6 +207,7 @@ public class AppletPDBViewer extends Frame
         clearButtonGroup();
         pdbcanvas.bysequence = true;
         pdbcanvas.updateSeqColours();
+        pdbcanvas.repaint();
       }
 
       void clearButtonGroup()