X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FAppletPDBViewer.java;h=90a79b029b464c8c4abb6c18761917a132fe1224;hb=55cae9b50608f760cbf6ae2627e1d79d16746186;hp=b2e1187889b5c80b278a4ad149fdd86f322be3f8;hpb=21c29b20790ac555b2e2a124a034f6c6b4486270;p=jalview.git

diff --git a/src/MCview/AppletPDBViewer.java b/src/MCview/AppletPDBViewer.java
index b2e1187..90a79b0 100644
--- a/src/MCview/AppletPDBViewer.java
+++ b/src/MCview/AppletPDBViewer.java
@@ -1,30 +1,52 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package MCview;
 
-import java.awt.*;
-import java.awt.event.*;
-
-import jalview.appletgui.*;
-import jalview.datamodel.*;
-import jalview.schemes.*;
+import jalview.appletgui.AlignmentPanel;
+import jalview.appletgui.CutAndPasteTransfer;
+import jalview.appletgui.EmbmenuFrame;
+import jalview.bin.JalviewLite;
+import jalview.datamodel.PDBEntry;
+import jalview.datamodel.SequenceI;
+import jalview.schemes.BuriedColourScheme;
+import jalview.schemes.HelixColourScheme;
+import jalview.schemes.HydrophobicColourScheme;
+import jalview.schemes.StrandColourScheme;
+import jalview.schemes.TaylorColourScheme;
+import jalview.schemes.TurnColourScheme;
+import jalview.schemes.ZappoColourScheme;
 import jalview.util.MessageManager;
 
+import java.awt.BorderLayout;
+import java.awt.CheckboxGroup;
+import java.awt.CheckboxMenuItem;
+import java.awt.Frame;
+import java.awt.Menu;
+import java.awt.MenuBar;
+import java.awt.MenuItem;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.ItemEvent;
+import java.awt.event.ItemListener;
+
 public class AppletPDBViewer extends EmbmenuFrame implements
         ActionListener, ItemListener
 {
@@ -49,7 +71,7 @@ public class AppletPDBViewer extends EmbmenuFrame implements
     StringBuffer title = new StringBuffer(seq[0].getName() + ":"
             + pdbcanvas.pdbentry.getFile());
 
-    jalview.bin.JalviewLite.addFrame(this, title.toString(), 400, 400);
+    JalviewLite.addFrame(this, title.toString(), 400, 400);
 
   }
 
@@ -57,12 +79,12 @@ public class AppletPDBViewer extends EmbmenuFrame implements
   {
     if (evt.getSource() == mapping)
     {
-      jalview.appletgui.CutAndPasteTransfer cap = new jalview.appletgui.CutAndPasteTransfer(
-              false, null);
+      CutAndPasteTransfer cap = new CutAndPasteTransfer(false, null);
       Frame frame = new Frame();
       frame.add(cap);
-      jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.pdb_sequence_mapping"),
-              500, 600);
+      JalviewLite.addFrame(frame,
+              MessageManager.getString("label.pdb_sequence_mapping"), 500,
+              600);
       cap.setText(pdbcanvas.mappingDetails.toString());
 
     }
@@ -167,7 +189,8 @@ public class AppletPDBViewer extends EmbmenuFrame implements
     chain.addActionListener(this);
     seqButton.setLabel(MessageManager.getString("action.by_sequence"));
     seqButton.addActionListener(this);
-    allchains.setLabel(MessageManager.getString("label.all_chains_visible"));
+    allchains
+            .setLabel(MessageManager.getString("label.all_chains_visible"));
     allchains.addItemListener(this);
     viewMenu.setLabel(MessageManager.getString("action.view"));
     zappo.setLabel(MessageManager.getString("label.zappo"));