X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FAppletPDBViewer.java;h=ce2083ae91449e3008b3dc763b9b3903b496fc28;hb=182d6f907cbe252b377af82f0ab58dfd83c6d9b7;hp=2c0080ee918a219a999eb8cece0d0ef914d36925;hpb=dfb45c8f874124d3ff3caac2902ed0c4a0e87cf5;p=jalview.git diff --git a/src/MCview/AppletPDBViewer.java b/src/MCview/AppletPDBViewer.java index 2c0080e..ce2083a 100755 --- a/src/MCview/AppletPDBViewer.java +++ b/src/MCview/AppletPDBViewer.java @@ -1,6 +1,6 @@ /* * Jalview - A Sequence Alignment Editor and Viewer - * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License @@ -28,18 +28,13 @@ import java.awt.event.ActionListener; import java.awt.event.ActionEvent; -public class AppletPDBViewer extends Frame +public class AppletPDBViewer extends Frame implements ActionListener, ItemListener { - PDBEntry pdb; - Sequence sequence; AppletPDBCanvas pdbcanvas; - - public AppletPDBViewer(String pdbtext,String type, Sequence seq, SeqCanvas seqcanvas) { - sequence = seq; try { @@ -54,7 +49,7 @@ public class AppletPDBViewer extends Frame add(pdbcanvas, BorderLayout.CENTER); - StringBuffer title = new StringBuffer(sequence.getName() + ":"); + StringBuffer title = new StringBuffer(seq.getName() + ":"); jalview.bin.JalviewLite.addFrame(this,title.toString(),400, 400); @@ -63,149 +58,104 @@ public class AppletPDBViewer extends Frame pdbcanvas.setPDBFile(pdbfile); } catch(Exception ex){ + ex.printStackTrace(); pdbcanvas.errorLoading = true; pdbcanvas.repaint(); } } + public void actionPerformed(ActionEvent evt) + { + if(evt.getSource()==mapping) + mapping_actionPerformed(); + else if(evt.getSource()==wire) + wire_actionPerformed(); + else if(evt.getSource()==depth) + depth_actionPerformed(); + else if(evt.getSource()==zbuffer) + zbuffer_actionPerformed(); + else if(evt.getSource()==charge) + charge_actionPerformed(); + + else if(evt.getSource()==chain) + chain_actionPerformed(); + else if(evt.getSource()==seqButton) + seqButton_actionPerformed(); + else if(evt.getSource()==zappo) + pdbcanvas.setColours(new ZappoColourScheme()); + else if(evt.getSource()==taylor) + pdbcanvas.setColours(new TaylorColourScheme()); + else if(evt.getSource()==hydro) + pdbcanvas.setColours(new HydrophobicColourScheme()); + else if(evt.getSource()==helix) + pdbcanvas.setColours(new HelixColourScheme()); + else if(evt.getSource()==strand) + pdbcanvas.setColours(new StrandColourScheme()); + else if(evt.getSource()==turn) + pdbcanvas.setColours(new TurnColourScheme()); + else if(evt.getSource()==buried) + pdbcanvas.setColours(new BuriedColourScheme()); + else if(evt.getSource()==user) + { + pdbcanvas.bysequence = false; + new jalview.appletgui.UserDefinedColours(pdbcanvas); + } + } + + public void itemStateChanged(ItemEvent evt) + { + if (evt.getSource() == allchains) + allchains_itemStateChanged(); + else if (evt.getSource() == wire) + wire_actionPerformed(); + else if (evt.getSource() == depth) + depth_actionPerformed(); + else if (evt.getSource() == zbuffer) + zbuffer_actionPerformed(); + } + private void jbInit() throws Exception { - this.setMenuBar(jMenuBar1); + setMenuBar(jMenuBar1); fileMenu.setLabel("File"); coloursMenu.setLabel("Colours"); mapping.setLabel("View Mapping"); - mapping.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent e) - { - mapping_actionPerformed(); - } - }); + mapping.addActionListener(this); wire.setLabel("Wireframe"); - wire.addItemListener(new ItemListener() - { - public void itemStateChanged(ItemEvent e) - { - wire_actionPerformed(); - } - }); + wire.addItemListener(this); depth.setState(true); depth.setLabel("Depthcue"); - depth.addItemListener(new ItemListener() - { - public void itemStateChanged(ItemEvent e) - { - depth_actionPerformed(); - } - }); + depth.addItemListener(this); zbuffer.setState(true); zbuffer.setLabel("Z Buffering"); - zbuffer.addItemListener(new ItemListener() - { - public void itemStateChanged(ItemEvent e) - { - zbuffer_actionPerformed(); - } - }); + zbuffer.addItemListener(this); charge.setLabel("Charge & Cysteine"); - charge.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent e) - { - charge_actionPerformed(); - } - }); + charge.addActionListener(this); hydro.setLabel("Hydrophobicity"); - hydro.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent e) - { - pdbcanvas.setColours(new HydrophobicColourScheme()); - } - }); + hydro.addActionListener(this); chain.setLabel("By Chain"); - chain.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent e) - { - chain_actionPerformed(); - } - }); + chain.addActionListener(this); seqButton.setLabel("By Sequence"); - seqButton.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent e){ - seqButton_actionPerformed(); - } - }); + seqButton.addActionListener(this); allchains.setLabel("All Chains Visible"); - allchains.addItemListener(new ItemListener() - { - public void itemStateChanged(ItemEvent itemEvent) - { - allchains_itemStateChanged(itemEvent); - } - }); + allchains.addItemListener(this); viewMenu.setLabel("View"); zappo.setLabel("Zappo"); - zappo.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - pdbcanvas.setColours(new ZappoColourScheme()); - } - }); + zappo.addActionListener(this); taylor.setLabel("Taylor"); - taylor.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - pdbcanvas.setColours(new TaylorColourScheme()); - } - }); + taylor.addActionListener(this); helix.setLabel("Helix Propensity"); - helix.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - pdbcanvas.setColours(new HelixColourScheme()); - } - }); + helix.addActionListener(this); strand.setLabel("Strand Propensity"); - strand.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - pdbcanvas.setColours(new StrandColourScheme()); - } - }); + strand.addActionListener(this); turn.setLabel("Turn Propensity"); - turn.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - pdbcanvas.setColours(new TurnColourScheme()); - } - }); + turn.addActionListener(this); buried.setLabel("Buried Index"); - buried.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - pdbcanvas.setColours(new BuriedColourScheme()); - } - }); + buried.addActionListener(this); user.setLabel("User Defined..."); - user.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - pdbcanvas.bysequence = false; - new jalview.appletgui.UserDefinedColours(pdbcanvas); - } - }); + user.addActionListener(this); jMenuBar1.add(fileMenu); jMenuBar1.add(coloursMenu); jMenuBar1.add(viewMenu); @@ -308,7 +258,7 @@ public class AppletPDBViewer extends Frame cap.setText(pdbcanvas.mappingDetails.toString()); } - public void allchains_itemStateChanged(ItemEvent itemEvent) + public void allchains_itemStateChanged() { pdbcanvas.setAllchainsVisible(allchains.getState()); }