X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FBond.java;h=371ccd5280ae124657d3748b03d883d8d8e8687a;hb=refs%2Ftags%2FRelease_2_11_1_4;hp=f76cbc24b24451d35293f42afe2003e834f3df79;hpb=47168f025aefdaa044802bd5f8f510ffe43a4808;p=jalview.git

diff --git a/src/MCview/Bond.java b/src/MCview/Bond.java
index f76cbc2..371ccd5 100755
--- a/src/MCview/Bond.java
+++ b/src/MCview/Bond.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,7 +20,7 @@
  */
 package MCview;
 
-import java.awt.*;
+import java.awt.Color;
 
 public class Bond
 {
@@ -36,10 +36,10 @@ public class Bond
 
   public Atom at2;
 
-  public Bond(float[] start, float[] end, Atom at1, Atom at2)
+  public Bond(Atom at1, Atom at2)
   {
-    this.start = start;
-    this.end = end;
+    this.start = new float[] { at1.x, at1.y, at1.z };
+    this.end = new float[] { at2.x, at2.y, at2.z };
     this.startCol = at1.color;
     this.endCol = at2.color;
     this.at1 = at1;
@@ -70,13 +70,13 @@ public class Bond
 
   public void translate(float x, float y, float z)
   {
-    start[0] = (start[0] + x);
-    end[0] = (end[0] + x);
+    start[0] = start[0] + x;
+    end[0] = end[0] + x;
 
-    start[1] = (start[1] + y);
-    end[1] = (end[1] + y);
+    start[1] = start[1] + y;
+    end[1] = end[1] + y;
 
-    start[2] = (start[2] + z);
-    end[2] = (end[2] + z);
+    start[2] = start[2] + z;
+    end[2] = end[2] + z;
   }
 }