X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FBond.java;h=fd364465bc739882fa54cc0b9baa334a84beee5e;hb=77c35fa912621cbadcf5ec74da4c6d45de6322e1;hp=17f66bba2f5ab5028bdfcb9ac0061ebe34e70c53;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git

diff --git a/src/MCview/Bond.java b/src/MCview/Bond.java
index 17f66bb..fd36446 100755
--- a/src/MCview/Bond.java
+++ b/src/MCview/Bond.java
@@ -1,6 +1,6 @@
 /*
 * Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
@@ -24,12 +24,12 @@ import java.awt.*;
 public class Bond {
     float[] start;
     float[] end;
-    Color startCol;
-    Color endCol;
-    public myAtom at1;
-    public myAtom at2;
+    Color startCol = Color.lightGray;
+    Color endCol= Color.lightGray;
+    public Atom at1;
+    public Atom at2;
 
-    public Bond(float[] start, float[] end, myAtom at1, myAtom at2) {
+    public Bond(float[] start, float[] end, Atom at1, Atom at2) {
         this.start = start;
         this.end = end;
         this.startCol = at1.color;
@@ -38,7 +38,7 @@ public class Bond {
         this.at2 = at2;
     }
 
-    public Bond(Bond bond) {
+  /*  public Bond(Bond bond) {
         this.start = new float[3];
 
         this.start[0] = bond.start[0];
@@ -55,12 +55,6 @@ public class Bond {
         this.endCol = bond.endCol;
     }
 
-    public void print() {
-        System.out.println("Start " + start[0] + " " + start[1] + " " +
-            start[2]);
-        System.out.println("End   " + end[0] + " " + end[1] + " " + end[2]);
-    }
-
     public float length() {
         float len = ((end[0] - start[0]) * (end[0] - start[0])) +
             ((end[1] - start[1]) * (end[1] - start[1])) +
@@ -69,7 +63,7 @@ public class Bond {
         len = (float) (Math.sqrt(len));
 
         return len;
-    }
+    }*/
 
     public void translate(float x, float y, float z) {
         start[0] = (start[0] + x);