X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBCanvas.java;h=4fd7a35fb2f323f4451018e80237bcb2e9d4d80a;hb=1004f551e9e11127a137aecdba045c1c75542b92;hp=f9461e163eef88c612fc4b71e902db6efa350c31;hpb=2da92b61300307562cb8bec70a72f0b0527aa3b3;p=jalview.git
diff --git a/src/MCview/PDBCanvas.java b/src/MCview/PDBCanvas.java
old mode 100755
new mode 100644
index f9461e1..4fd7a35
--- a/src/MCview/PDBCanvas.java
+++ b/src/MCview/PDBCanvas.java
@@ -1,19 +1,22 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package MCview;
@@ -107,7 +110,7 @@ public class PDBCanvas extends JPanel implements MouseListener,
boolean seqColoursReady = false;
- jalview.gui.FeatureRenderer fr;
+ jalview.renderer.seqfeatures.FeatureRenderer fr;
Color backgroundColour = Color.black;
@@ -124,7 +127,7 @@ public class PDBCanvas extends JPanel implements MouseListener,
this.pdbentry = pdbentry;
this.sequence = seq;
- ssm = StructureSelectionManager.getStructureSelectionManager();
+ ssm = ap.av.getStructureSelectionManager();
try
{
@@ -517,7 +520,7 @@ public class PDBCanvas extends JPanel implements MouseListener,
StructureMapping[] mapping = ssm.getMapping(pdbentry.getFile());
boolean showFeatures = false;
- if (ap.av.getShowSequenceFeatures())
+ if (ap.av.isShowSequenceFeatures())
{
if (fr == null)
{
@@ -1161,7 +1164,7 @@ public class PDBCanvas extends JPanel implements MouseListener,
public void releaseReferences(Object svl)
{
// TODO Auto-generated method stub
-
+
}
}