X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBCanvas.java;h=4fd7a35fb2f323f4451018e80237bcb2e9d4d80a;hb=4d45b9698cbf80c55600a02cb38a25b85d8a210c;hp=f9461e163eef88c612fc4b71e902db6efa350c31;hpb=2da92b61300307562cb8bec70a72f0b0527aa3b3;p=jalview.git

diff --git a/src/MCview/PDBCanvas.java b/src/MCview/PDBCanvas.java
old mode 100755
new mode 100644
index f9461e1..4fd7a35
--- a/src/MCview/PDBCanvas.java
+++ b/src/MCview/PDBCanvas.java
@@ -1,19 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package MCview;
 
@@ -107,7 +110,7 @@ public class PDBCanvas extends JPanel implements MouseListener,
 
   boolean seqColoursReady = false;
 
-  jalview.gui.FeatureRenderer fr;
+  jalview.renderer.seqfeatures.FeatureRenderer fr;
 
   Color backgroundColour = Color.black;
 
@@ -124,7 +127,7 @@ public class PDBCanvas extends JPanel implements MouseListener,
     this.pdbentry = pdbentry;
     this.sequence = seq;
 
-    ssm = StructureSelectionManager.getStructureSelectionManager();
+    ssm = ap.av.getStructureSelectionManager();
 
     try
     {
@@ -517,7 +520,7 @@ public class PDBCanvas extends JPanel implements MouseListener,
     StructureMapping[] mapping = ssm.getMapping(pdbentry.getFile());
 
     boolean showFeatures = false;
-    if (ap.av.getShowSequenceFeatures())
+    if (ap.av.isShowSequenceFeatures())
     {
       if (fr == null)
       {
@@ -1161,7 +1164,7 @@ public class PDBCanvas extends JPanel implements MouseListener,
   public void releaseReferences(Object svl)
   {
     // TODO Auto-generated method stub
-    
+
   }
 
 }