X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBCanvas.java;h=6014455efd09eedd0a1e4345318ffb7506a415e7;hb=dfb45c8f874124d3ff3caac2902ed0c4a0e87cf5;hp=17db1a0b26059f5fce1386a0c44c5609f84ba94b;hpb=8893c2ac9824d4c566ae69c73d34889c5316b058;p=jalview.git

diff --git a/src/MCview/PDBCanvas.java b/src/MCview/PDBCanvas.java
index 17db1a0..6014455 100755
--- a/src/MCview/PDBCanvas.java
+++ b/src/MCview/PDBCanvas.java
@@ -72,6 +72,7 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
     PDBChain mainchain;
     Vector highlightRes;
     boolean pdbAction = false;
+    boolean seqColoursReady = false;
 
     public PDBCanvas(jalview.gui.SeqCanvas seqcanvas, Sequence seq)
     {
@@ -198,6 +199,7 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
     Vector visiblebonds;
     void setupBonds()
     {
+      seqColoursReady = false;
       // Sort the bonds by z coord
       visiblebonds = new Vector();
 
@@ -215,6 +217,7 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
       }
 
       updateSeqColours();
+      seqColoursReady = true;
       redrawneeded = true;
       repaint();
     }
@@ -369,7 +372,7 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
     {
       super.paintComponent(g);
 
-      if(visiblebonds==null)
+      if(!seqColoursReady)
       {
         g.setColor(Color.black);
         g.setFont(new Font("Verdana", Font.BOLD, 14));
@@ -929,6 +932,8 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
    Bond highlightBond1, highlightBond2;
    public void highlightRes(int ii)
   {
+    if( !seqColoursReady )
+      return;
 
     if (highlightRes != null
         && highlightRes.contains((ii-1) + ""))