X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBCanvas.java;h=79871e8d6fdce597fc2cc76080753e185700298a;hb=a4fca83856b96df2fe8701bb5cc14c8d1d0a6b09;hp=dcaea2b7d45bf19062e3a43f541ab9d7b44f01d2;hpb=f3f3f5d2d3d137ab12ea944a7a120de51677a5c6;p=jalview.git

diff --git a/src/MCview/PDBCanvas.java b/src/MCview/PDBCanvas.java
index dcaea2b..79871e8 100755
--- a/src/MCview/PDBCanvas.java
+++ b/src/MCview/PDBCanvas.java
@@ -571,12 +571,12 @@ public class PDBCanvas
 
       xstart = (int) ( ( (tmpBond.start[0] - centre[0]) * scale) +
                       (getWidth() / 2));
-      ystart = (int) ( ( (tmpBond.start[1] - centre[1]) * scale) +
+      ystart = (int) ( ( (centre[1] - tmpBond.start[1] ) * scale) +
                       (getHeight() / 2));
 
       xend = (int) ( ( (tmpBond.end[0] - centre[0]) * scale) +
                     (getWidth() / 2));
-      yend = (int) ( ( (tmpBond.end[1] - centre[1]) * scale) +
+      yend = (int) ( ( (centre[1] - tmpBond.end[1] ) * scale) +
                     (getHeight() / 2));
 
       xmid = (xend + xstart) / 2;
@@ -888,7 +888,7 @@ public class PDBCanvas
     {
       int xstart = (int) ( ( (b.start[0] - centre[0]) * scale) +
                           (getWidth() / 2));
-      int ystart = (int) ( ( (b.start[1] - centre[1]) * scale) +
+      int ystart = (int) ( ( (centre[1] - b.start[1] ) * scale) +
                           (getHeight() / 2));
 
       g.drawString(b.at1.resName + "-" + b.at1.resNumber, xstart, ystart);
@@ -898,7 +898,7 @@ public class PDBCanvas
     {
       int xstart = (int) ( ( (b.end[0] - centre[0]) * scale) +
                           (getWidth() / 2));
-      int ystart = (int) ( ( (b.end[1] - centre[1]) * scale) +
+      int ystart = (int) ( ( (centre[1] - b.end[1] ) * scale) +
                           (getHeight() / 2));
 
       g.drawString(b.at2.resName + "-" + b.at2.resNumber, xstart, ystart);
@@ -931,7 +931,7 @@ public class PDBCanvas
 
           if (Math.abs(truex - x) <= 2)
           {
-            int truey = (int) ( ( (tmpBond.start[1] - centre[1]) * scale) +
+            int truey = (int) ( ( (centre[1] - tmpBond.start[1] ) * scale) +
                                (getHeight() / 2));
 
             if (Math.abs(truey - y) <= 2)