X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBCanvas.java;h=ab172f2cb8744b7c44b0c02f5adedce21c236557;hb=bcd5c6cc4f8e2ad6a510f701d1caefe59b6a88f0;hp=b2f250337f1a5f50dce6f0b9904268bf454c8101;hpb=3d0101179759ef157b088ea135423cd909512d9f;p=jalview.git

diff --git a/src/MCview/PDBCanvas.java b/src/MCview/PDBCanvas.java
index b2f2503..ab172f2 100644
--- a/src/MCview/PDBCanvas.java
+++ b/src/MCview/PDBCanvas.java
@@ -153,7 +153,8 @@ public class PDBCanvas extends JPanel
 
     try
     {
-      pdb = ssm.setMapping(seq, chains, pdbentry.getFile(), protocol);
+      pdb = ssm.setMapping(seq, chains, pdbentry.getFile(), protocol,
+              ap.alignFrame);
 
       if (protocol.equals(jalview.io.DataSourceType.PASTE))
       {