X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBChain.java;h=8812dcc47a6a95680616c1c3533cd727fa79f5b7;hb=b7bcefd67d59442fb18402fe3fb7f9dad945dbaf;hp=408108bf2927716d761aabab11427ae94f313f63;hpb=061768ec2478b05bca723cb28385655fe060fef2;p=jalview.git

diff --git a/src/MCview/PDBChain.java b/src/MCview/PDBChain.java
index 408108b..8812dcc 100755
--- a/src/MCview/PDBChain.java
+++ b/src/MCview/PDBChain.java
@@ -534,24 +534,24 @@ public class PDBChain
       }
       else
       {
-      if (sequence != null && sequence.getAnnotation() != null)
-      {
-        for (AlignmentAnnotation ana : sequence.getAnnotation())
+        if (sequence != null && sequence.getAnnotation() != null)
         {
-          List<AlignmentAnnotation> transfer = sq.getAlignmentAnnotations(
-                  ana.getCalcId(), ana.label);
-          if (transfer == null || transfer.size() == 0)
-          {
-            ana.liftOver(dsq, sqmpping);
-            // mapping.transfer(ana);
-          }
-          else
+          for (AlignmentAnnotation ana : sequence.getAnnotation())
           {
-            continue;
+            List<AlignmentAnnotation> transfer = sq
+                    .getAlignmentAnnotations(ana.getCalcId(), ana.label);
+            if (transfer == null || transfer.size() == 0)
+            {
+              ana.liftOver(dsq, sqmpping);
+              // mapping.transfer(ana);
+            }
+            else
+            {
+              continue;
+            }
           }
         }
       }
-      }
       if (false)
       {
         // Useful for debugging mappings - adds annotation for mapped position