X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBChain.java;h=ba93046f0a3467e670725a67398d6d8e7b48b656;hb=3f5e846ddfee0852718bef491e2839476f5281d3;hp=6bc79dcd8d045f58fbea7c3ca51850b3df3afb54;hpb=a4f0dde265e92e2639af7d953859f7d033e72c5a;p=jalview.git

diff --git a/src/MCview/PDBChain.java b/src/MCview/PDBChain.java
index 6bc79dc..ba93046 100755
--- a/src/MCview/PDBChain.java
+++ b/src/MCview/PDBChain.java
@@ -149,7 +149,7 @@ public class PDBChain
         pdbpos++;
       }
 
-      boolean sameResidue = Comparison.compareChars(as.astr1.charAt(i),
+      boolean sameResidue = Comparison.isSameResidue(as.astr1.charAt(i),
               as.astr2.charAt(i), false);
       if (sameResidue)
       {
@@ -518,10 +518,12 @@ public class PDBChain
       try
       {
         index = ResidueProperties.aa3Hash.get(b.at1.resName).intValue();
-        b.startCol = cs.findColour(ResidueProperties.aa[index].charAt(0));
+        b.startCol = cs.findColour(ResidueProperties.aa[index].charAt(0),
+                0, null, null, 0f);
 
         index = ResidueProperties.aa3Hash.get(b.at2.resName).intValue();
-        b.endCol = cs.findColour(ResidueProperties.aa[index].charAt(0));
+        b.endCol = cs.findColour(ResidueProperties.aa[index].charAt(0), 0,
+                null, null, 0f);
 
       } catch (Exception e)
       {