X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBViewer.java;h=082ce6e1f0b9d7cddc0d1a373e441f55896d3305;hb=32ccffc95209f230faacf6f27394669c0dc8b271;hp=06b6f65c664f30fd4a57281fb916526772895119;hpb=c6aaf0ef217426a5e23be7db9cbc6a8369115850;p=jalview.git

diff --git a/src/MCview/PDBViewer.java b/src/MCview/PDBViewer.java
index 06b6f65..082ce6e 100755
--- a/src/MCview/PDBViewer.java
+++ b/src/MCview/PDBViewer.java
@@ -19,9 +19,13 @@ public class PDBViewer extends JInternalFrame implements Runnable
                    Sequence seq,
                    SeqCanvas seqcanvas)
   {
+
     pdb = entry;
     sequence = seq;
 
+    Thread worker = new Thread(this);
+    worker.start();
+
     try
     {
       jbInit();
@@ -42,10 +46,8 @@ public class PDBViewer extends JInternalFrame implements Runnable
       title.append( " Chain:" );
       title.append( pdb.getProperty().get("chains"));
     }
-    Desktop.addInternalFrame(this,title.toString(),400, 400);
 
-     Thread worker = new Thread(this);
-     worker.start();
+     Desktop.addInternalFrame(this,title.toString(),400, 400);
   }
 
   public void run()
@@ -53,8 +55,7 @@ public class PDBViewer extends JInternalFrame implements Runnable
     try
     {
       EBIFetchClient ebi = new EBIFetchClient();
-      String[] result = ebi.fetchData("pdb:" + pdb.getId(), null,
-                                      null);
+      String[] result = ebi.fetchData("pdb:" + pdb.getId(), "default","raw");
 
       PDBfile pdbfile = new PDBfile(result);
 
@@ -337,7 +338,7 @@ public class PDBViewer extends JInternalFrame implements Runnable
   public void mapping_actionPerformed(ActionEvent e)
   {
     jalview.gui.CutAndPasteTransfer cap = new jalview.gui.CutAndPasteTransfer();
-    Desktop.addInternalFrame(cap, "PDB - Sequence Mapping", 500, 600);
+    Desktop.addInternalFrame(cap, "PDB - Sequence Mapping", 550, 600);
     cap.setText(pdbcanvas.mappingDetails.toString());
   }