X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBViewer.java;h=5b30043cbdba2fc97308bae432c536b0ef79a367;hb=a8f483d04205bb8273ee311c12968b7e86d205fa;hp=b3aae5130c3836b5158aa0f89a6060c6d3e5c6e6;hpb=28787d9646cca5dd77190930f59b7ff32cf995b4;p=jalview.git diff --git a/src/MCview/PDBViewer.java b/src/MCview/PDBViewer.java index b3aae51..5b30043 100755 --- a/src/MCview/PDBViewer.java +++ b/src/MCview/PDBViewer.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8) - * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) + * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * @@ -14,6 +14,7 @@ * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package MCview; @@ -21,19 +22,12 @@ import java.io.*; import java.awt.event.*; import javax.swing.*; -import javax.xml.parsers.ParserConfigurationException; - -import org.xml.sax.SAXException; - -import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax; -import fr.orsay.lri.varna.exceptions.ExceptionLoadingFailed; -import fr.orsay.lri.varna.exceptions.ExceptionPermissionDenied; -import fr.orsay.lri.varna.exceptions.ExceptionUnmatchedClosingParentheses; import jalview.datamodel.*; import jalview.gui.*; import jalview.io.*; import jalview.schemes.*; +import jalview.util.MessageManager; import jalview.ws.ebi.EBIFetchClient; public class PDBViewer extends JInternalFrame implements Runnable @@ -57,8 +51,7 @@ public class PDBViewer extends JInternalFrame implements Runnable String tmpPDBFile; public PDBViewer(PDBEntry pdbentry, SequenceI[] seq, String[] chains, - AlignmentPanel ap, String protocol) throws ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed, InterruptedException, ExceptionUnmatchedClosingParentheses - + AlignmentPanel ap, String protocol) { this.pdbentry = pdbentry; this.seq = seq; @@ -147,10 +140,10 @@ public class PDBViewer extends JInternalFrame implements Runnable }); this.setJMenuBar(jMenuBar1); - fileMenu.setText("File"); - coloursMenu.setText("Colours"); - saveMenu.setActionCommand("Save Image"); - saveMenu.setText("Save As"); + fileMenu.setText(MessageManager.getString("action.file")); + coloursMenu.setText(MessageManager.getString("label.colours")); + saveMenu.setActionCommand(MessageManager.getString("action.save_image")); + saveMenu.setText(MessageManager.getString("action.save_as")); png.setText("PNG"); png.addActionListener(new ActionListener() { @@ -167,7 +160,7 @@ public class PDBViewer extends JInternalFrame implements Runnable eps_actionPerformed(e); } }); - mapping.setText("View Mapping"); + mapping.setText(MessageManager.getString("label.view_mapping")); mapping.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -175,7 +168,7 @@ public class PDBViewer extends JInternalFrame implements Runnable mapping_actionPerformed(e); } }); - wire.setText("Wireframe"); + wire.setText(MessageManager.getString("label.wireframe")); wire.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -184,7 +177,7 @@ public class PDBViewer extends JInternalFrame implements Runnable } }); depth.setSelected(true); - depth.setText("Depthcue"); + depth.setText(MessageManager.getString("label.depthcue")); depth.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -193,7 +186,7 @@ public class PDBViewer extends JInternalFrame implements Runnable } }); zbuffer.setSelected(true); - zbuffer.setText("Z Buffering"); + zbuffer.setText(MessageManager.getString("label.z_buffering")); zbuffer.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -201,7 +194,7 @@ public class PDBViewer extends JInternalFrame implements Runnable zbuffer_actionPerformed(e); } }); - charge.setText("Charge & Cysteine"); + charge.setText(MessageManager.getString("label.charge_cysteine")); charge.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -209,7 +202,7 @@ public class PDBViewer extends JInternalFrame implements Runnable charge_actionPerformed(e); } }); - chain.setText("By Chain"); + chain.setText(MessageManager.getString("action.by_chain")); chain.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -218,7 +211,7 @@ public class PDBViewer extends JInternalFrame implements Runnable } }); seqButton.setSelected(true); - seqButton.setText("By Sequence"); + seqButton.setText(MessageManager.getString("action.by_sequence")); seqButton.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -227,7 +220,7 @@ public class PDBViewer extends JInternalFrame implements Runnable } }); allchains.setSelected(true); - allchains.setText("Show All Chains"); + allchains.setText(MessageManager.getString("label.show_all_chains")); allchains.addItemListener(new ItemListener() { public void itemStateChanged(ItemEvent e) @@ -235,7 +228,7 @@ public class PDBViewer extends JInternalFrame implements Runnable allchains_itemStateChanged(e); } }); - zappo.setText("Zappo"); + zappo.setText(MessageManager.getString("label.zappo")); zappo.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -243,7 +236,7 @@ public class PDBViewer extends JInternalFrame implements Runnable zappo_actionPerformed(e); } }); - taylor.setText("Taylor"); + taylor.setText(MessageManager.getString("label.taylor")); taylor.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -251,7 +244,7 @@ public class PDBViewer extends JInternalFrame implements Runnable taylor_actionPerformed(e); } }); - hydro.setText("Hydro"); + hydro.setText(MessageManager.getString("label.hydrophobicity")); hydro.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -259,7 +252,7 @@ public class PDBViewer extends JInternalFrame implements Runnable hydro_actionPerformed(e); } }); - helix.setText("Helix"); + helix.setText(MessageManager.getString("label.helix_propensity")); helix.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -267,7 +260,7 @@ public class PDBViewer extends JInternalFrame implements Runnable helix_actionPerformed(e); } }); - strand.setText("Strand"); + strand.setText(MessageManager.getString("label.strand_propensity")); strand.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -275,7 +268,7 @@ public class PDBViewer extends JInternalFrame implements Runnable strand_actionPerformed(e); } }); - turn.setText("Turn"); + turn.setText(MessageManager.getString("label.turn_propensity")); turn.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -283,7 +276,7 @@ public class PDBViewer extends JInternalFrame implements Runnable turn_actionPerformed(e); } }); - buried.setText("Buried"); + buried.setText(MessageManager.getString("label.buried_index")); buried.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -291,7 +284,7 @@ public class PDBViewer extends JInternalFrame implements Runnable buried_actionPerformed(e); } }); - user.setText("User Defined..."); + user.setText(MessageManager.getString("action.user_defined")); user.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -299,8 +292,8 @@ public class PDBViewer extends JInternalFrame implements Runnable user_actionPerformed(e); } }); - viewMenu.setText("View"); - background.setText("Background Colour..."); + viewMenu.setText(MessageManager.getString("action.view")); + background.setText(MessageManager.getString("label.background_colour") + "..."); background.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -308,7 +301,7 @@ public class PDBViewer extends JInternalFrame implements Runnable background_actionPerformed(e); } }); - savePDB.setText("PDB File"); + savePDB.setText(MessageManager.getString("label.pdb_file")); savePDB.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -370,8 +363,8 @@ public class PDBViewer extends JInternalFrame implements Runnable int option = JOptionPane.showInternalConfirmDialog( jalview.gui.Desktop.desktop, - "Remove from default list?", - "Remove user defined colour", + MessageManager.getString("label.remove_from_default_list"), + MessageManager.getString("label.remove_user_defined_colour"), JOptionPane.YES_NO_OPTION); if (option == JOptionPane.YES_OPTION) { @@ -572,7 +565,7 @@ public class PDBViewer extends JInternalFrame implements Runnable try { cap.setText(pdbcanvas.mappingDetails.toString()); - Desktop.addInternalFrame(cap, "PDB - Sequence Mapping", 550, 600); + Desktop.addInternalFrame(cap, MessageManager.getString("label.pdb_sequence_mapping"), 550, 600); } catch (OutOfMemoryError oom) { new OOMWarning("Opening sequence to structure mapping report", oom); @@ -635,7 +628,7 @@ public class PDBViewer extends JInternalFrame implements Runnable public void user_actionPerformed(ActionEvent e) { - if (e.getActionCommand().equals("User Defined...")) + if (e.getActionCommand().equals(MessageManager.getString("action.user_defined"))) { // new UserDefinedColours(pdbcanvas, null); } @@ -653,7 +646,7 @@ public class PDBViewer extends JInternalFrame implements Runnable public void background_actionPerformed(ActionEvent e) { java.awt.Color col = JColorChooser.showDialog(this, - "Select Background Colour", pdbcanvas.backgroundColour); + MessageManager.getString("label.select_backgroud_colour"), pdbcanvas.backgroundColour); if (col != null) { @@ -670,7 +663,7 @@ public class PDBViewer extends JInternalFrame implements Runnable chooser.setFileView(new JalviewFileView()); chooser.setDialogTitle("Save PDB File"); - chooser.setToolTipText("Save"); + chooser.setToolTipText(MessageManager.getString("action.save")); int value = chooser.showSaveDialog(this);