X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBViewer.java;h=b3aae5130c3836b5158aa0f89a6060c6d3e5c6e6;hb=9a59ebeab8ec986ea70103431d9f63412f640625;hp=3c4698fbd3f82739d1454c3094d8edf3f6ba0e80;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git

diff --git a/src/MCview/PDBViewer.java b/src/MCview/PDBViewer.java
index 3c4698f..b3aae51 100755
--- a/src/MCview/PDBViewer.java
+++ b/src/MCview/PDBViewer.java
@@ -21,6 +21,14 @@ import java.io.*;
 
 import java.awt.event.*;
 import javax.swing.*;
+import javax.xml.parsers.ParserConfigurationException;
+
+import org.xml.sax.SAXException;
+
+import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax;
+import fr.orsay.lri.varna.exceptions.ExceptionLoadingFailed;
+import fr.orsay.lri.varna.exceptions.ExceptionPermissionDenied;
+import fr.orsay.lri.varna.exceptions.ExceptionUnmatchedClosingParentheses;
 
 import jalview.datamodel.*;
 import jalview.gui.*;
@@ -28,8 +36,6 @@ import jalview.io.*;
 import jalview.schemes.*;
 import jalview.ws.ebi.EBIFetchClient;
 
-import java.awt.BorderLayout;
-
 public class PDBViewer extends JInternalFrame implements Runnable
 {
 
@@ -51,7 +57,7 @@ public class PDBViewer extends JInternalFrame implements Runnable
   String tmpPDBFile;
 
   public PDBViewer(PDBEntry pdbentry, SequenceI[] seq, String[] chains,
-          AlignmentPanel ap, String protocol)
+          AlignmentPanel ap, String protocol) throws ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed, InterruptedException, ExceptionUnmatchedClosingParentheses
 
   {
     this.pdbentry = pdbentry;
@@ -685,6 +691,7 @@ public class PDBViewer extends JInternalFrame implements Runnable
           }
         }
         out.close();
+        in.close();
       } catch (Exception ex)
       {
         ex.printStackTrace();