X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBfile.java;h=99a0a2b6b05400dd460674f53b30fbf9e138540e;hb=a452823dc1f0f02a366ea432cb161a7e1b1570ca;hp=36eecb8471f24e76b50b4659232b69456c7dd6a5;hpb=1e8006f71404e0afb34bcb2d754abce7f6d3fe25;p=jalview.git

diff --git a/src/MCview/PDBfile.java b/src/MCview/PDBfile.java
index 36eecb8..99a0a2b 100755
--- a/src/MCview/PDBfile.java
+++ b/src/MCview/PDBfile.java
@@ -1,6 +1,6 @@
 /*
 * Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
@@ -18,13 +18,10 @@
 */
 package MCview;
 
-import jalview.io.AppletFormatAdapter;
 import jalview.datamodel.*;
 
 import java.io.*;
 
-import java.net.*;
-
 import java.util.*;
 import java.awt.Color;
 
@@ -103,6 +100,10 @@ public class PDBfile extends jalview.io.AlignFile {
        makeResidueList();
        makeCaBondList();
 
+       if(id==null)
+       {
+         id = inFile.getName();
+       }
        for (int i = 0; i < chains.size(); i++)
        {
          SequenceI seq = ( (PDBChain) chains.elementAt(i)).
@@ -114,7 +115,8 @@ public class PDBfile extends jalview.io.AlignFile {
 
          PDBEntry entry = new PDBEntry();
          entry.setId(id);
-         entry.setFile(inFile.getAbsolutePath());
+         if(inFile!=null)
+           entry.setFile(inFile.getAbsolutePath());
 
          seq.setDatasetSequence(dataset);
          dataset.addPDBId(entry);