X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FResidue.java;h=0f241377879e3e88327eaf7c8e64ce1ddd1560d8;hb=56d38f8d7edde0f57249a2b7173437c9157f31e8;hp=6e058f3abc255d252f8b780674b94e40938eaf45;hpb=9b22c11a0e12a9320e41eca2cbcbe30f81eb1cb4;p=jalview.git

diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java
index 6e058f3..0f24137 100755
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,28 +1,48 @@
+/*
+* Jalview - A Sequence Alignment Editor and Viewer
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+*
+* This program is free software; you can redistribute it and/or
+* modify it under the terms of the GNU General Public License
+* as published by the Free Software Foundation; either version 2
+* of the License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with this program; if not, write to the Free Software
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+*/
 package MCview;
 
 import java.util.*;
 
 
 public class Residue {
-  Vector atoms = new Vector();
+    Vector atoms = new Vector();
+    int number;
+    int count;
+    int seqnumber;
 
-  int number;
-  int count;
-  int seqnumber;
-
-  public Residue(Vector atoms, int number, int count) {
-    this.atoms  = atoms;
-    this.number = number;
-    this.count  = count;
-  }
+    public Residue(Vector atoms, int number, int count) {
+        this.atoms = atoms;
+        this.number = number;
+        this.count = count;
+    }
 
-  public myAtom findAtom(String name) {
+    public Atom findAtom(String name)
+    {
+        for (int i = 0; i < atoms.size(); i++)
+        {
+            if (((Atom) atoms.elementAt(i)).name.equals(name))
+            {
+                return (Atom) atoms.elementAt(i);
+            }
+        }
 
-    for (int i = 0; i < atoms.size(); i++) {
-      if (((myAtom)atoms.elementAt(i)).name.equals(name)) {
-        return (myAtom)atoms.elementAt(i);
-      }
+        return null;
     }
-    return null;
-  }
 }