X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FResidue.java;h=39e711205da2eac518f875a4a158c2ec74944776;hb=e894eb87d40be6e8452d19032ddffe80dad5f804;hp=0f241377879e3e88327eaf7c8e64ce1ddd1560d8;hpb=0f71bfca98457c30f1051f142c31b6aaa3e23ead;p=jalview.git diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java index 0f24137..39e7112 100755 --- a/src/MCview/Residue.java +++ b/src/MCview/Residue.java @@ -1,48 +1,48 @@ -/* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ -package MCview; - -import java.util.*; - - -public class Residue { - Vector atoms = new Vector(); - int number; - int count; - int seqnumber; - - public Residue(Vector atoms, int number, int count) { - this.atoms = atoms; - this.number = number; - this.count = count; - } - - public Atom findAtom(String name) - { - for (int i = 0; i < atoms.size(); i++) - { - if (((Atom) atoms.elementAt(i)).name.equals(name)) - { - return (Atom) atoms.elementAt(i); - } - } - - return null; - } -} +/* +* Jalview - A Sequence Alignment Editor and Viewer +* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle +* +* This program is free software; you can redistribute it and/or +* modify it under the terms of the GNU General Public License +* as published by the Free Software Foundation; either version 2 +* of the License, or (at your option) any later version. +* +* This program is distributed in the hope that it will be useful, +* but WITHOUT ANY WARRANTY; without even the implied warranty of +* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +* GNU General Public License for more details. +* +* You should have received a copy of the GNU General Public License +* along with this program; if not, write to the Free Software +* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA +*/ +package MCview; + +import java.util.*; + + +public class Residue { + Vector atoms = new Vector(); + int number; + int count; + int seqnumber; + + public Residue(Vector atoms, int number, int count) { + this.atoms = atoms; + this.number = number; + this.count = count; + } + + public Atom findAtom(String name) + { + for (int i = 0; i < atoms.size(); i++) + { + if (((Atom) atoms.elementAt(i)).name.equals(name)) + { + return (Atom) atoms.elementAt(i); + } + } + + return null; + } +}