X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FResidue.java;h=66ae7acfe5d9ece3ce2b98ac93b8a4144175f9b2;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=6e058f3abc255d252f8b780674b94e40938eaf45;hpb=9b22c11a0e12a9320e41eca2cbcbe30f81eb1cb4;p=jalview.git
diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java
index 6e058f3..66ae7ac 100755
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,28 +1,52 @@
-package MCview;
-
-import java.util.*;
-
-
-public class Residue {
- Vector atoms = new Vector();
-
- int number;
- int count;
- int seqnumber;
-
- public Residue(Vector atoms, int number, int count) {
- this.atoms = atoms;
- this.number = number;
- this.count = count;
- }
-
- public myAtom findAtom(String name) {
-
- for (int i = 0; i < atoms.size(); i++) {
- if (((myAtom)atoms.elementAt(i)).name.equals(name)) {
- return (myAtom)atoms.elementAt(i);
- }
- }
- return null;
- }
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package MCview;
+
+import java.util.Vector;
+
+public class Residue
+{
+ Vector atoms;
+
+ int number;
+
+ int count;
+
+ public Residue(Vector resAtoms, int number, int count)
+ {
+ this.atoms = resAtoms;
+ this.number = number;
+ this.count = count;
+ }
+
+ public Atom findAtom(String name)
+ {
+ for (Atom atom : atoms)
+ {
+ if (atom.name.equals(name))
+ {
+ return atom;
+ }
+ }
+
+ return null;
+ }
+}