X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FResidue.java;h=abb29a81c3c76f004e5e1a4452a4366409624a4c;hb=c7e8d3a34d2bac0206a942b393e9b6d4d52c55a2;hp=09aba33bce1bd8c2480961c438f680e031c3bae7;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git
diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java
index 09aba33..abb29a8 100755
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,48 +1,49 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package MCview;
-import java.util.*;
+import java.util.Vector;
public class Residue
{
- Vector atoms = new Vector();
+ Vector atoms;
int number;
int count;
- int seqnumber;
-
- public Residue(Vector atoms, int number, int count)
+ public Residue(Vector resAtoms, int number, int count)
{
- this.atoms = atoms;
+ this.atoms = resAtoms;
this.number = number;
this.count = count;
}
public Atom findAtom(String name)
{
- for (int i = 0; i < atoms.size(); i++)
+ for (Atom atom : atoms)
{
- if (((Atom) atoms.elementAt(i)).name.equals(name))
+ if (atom.name.equals(name))
{
- return (Atom) atoms.elementAt(i);
+ return atom;
}
}