X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FResidue.java;h=e99c746324975fc4bc52b4890c9c5d7051db008a;hb=41ba5c9b6ca4b0d5f065295e7196b9b090bdcef8;hp=998e3880e035d89927b3e527a726ba9d7c338ec2;hpb=99c58ee0ae2a848f982552e53feaf6d5cb9925e5;p=jalview.git

diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java
index 998e388..e99c746 100755
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,47 +1,49 @@
 /*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/
-
+ * Jalview - A Sequence Alignment Editor and Viewer
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ */
 package MCview;
 
 import java.util.*;
 
-
-public class Residue {
+public class Residue
+{
   Vector atoms = new Vector();
-
   int number;
   int count;
   int seqnumber;
 
-  public Residue(Vector atoms, int number, int count) {
-    this.atoms  = atoms;
+  public Residue(Vector atoms, int number, int count)
+  {
+    this.atoms = atoms;
     this.number = number;
-    this.count  = count;
+    this.count = count;
   }
 
-  public myAtom findAtom(String name) {
-
-    for (int i = 0; i < atoms.size(); i++) {
-      if (((myAtom)atoms.elementAt(i)).name.equals(name)) {
-        return (myAtom)atoms.elementAt(i);
+  public Atom findAtom(String name)
+  {
+    for (int i = 0; i < atoms.size(); i++)
+    {
+      if ( ( (Atom) atoms.elementAt(i)).name.equals(name))
+      {
+        return (Atom) atoms.elementAt(i);
       }
     }
+
     return null;
   }
 }