X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FResidue.java;h=e99c746324975fc4bc52b4890c9c5d7051db008a;hb=dd74fc4938723fe5ec48d4e5fdcfbe58ac42a48d;hp=b01d982b94805ed8c4fe00c11e1bea77eeb462dd;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git

diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java
index b01d982..e99c746 100755
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,45 +1,49 @@
 /*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/
+ * Jalview - A Sequence Alignment Editor and Viewer
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ */
 package MCview;
 
 import java.util.*;
 
+public class Residue
+{
+  Vector atoms = new Vector();
+  int number;
+  int count;
+  int seqnumber;
 
-public class Residue {
-    Vector atoms = new Vector();
-    int number;
-    int count;
-    int seqnumber;
+  public Residue(Vector atoms, int number, int count)
+  {
+    this.atoms = atoms;
+    this.number = number;
+    this.count = count;
+  }
 
-    public Residue(Vector atoms, int number, int count) {
-        this.atoms = atoms;
-        this.number = number;
-        this.count = count;
+  public Atom findAtom(String name)
+  {
+    for (int i = 0; i < atoms.size(); i++)
+    {
+      if ( ( (Atom) atoms.elementAt(i)).name.equals(name))
+      {
+        return (Atom) atoms.elementAt(i);
+      }
     }
 
-    public myAtom findAtom(String name) {
-        for (int i = 0; i < atoms.size(); i++) {
-            if (((myAtom) atoms.elementAt(i)).name.equals(name)) {
-                return (myAtom) atoms.elementAt(i);
-            }
-        }
-
-        return null;
-    }
+    return null;
+  }
 }