X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FResidue.java;h=edef5f1bcfe22cb7826fed42dce87bbbc873a5e8;hb=39b4859e1a1b011af5d06058461db4d075acb578;hp=b1d84134bfd83adb8e690ef4a26db453f84a528c;hpb=ab43013b7e357b84b4abade0dba949668dfb2a0e;p=jalview.git

diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java
index b1d8413..edef5f1 100755
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,35 +20,38 @@
  */
 package MCview;
 
-import java.util.*;
+import java.util.Vector;
 
 public class Residue
 {
-  Vector atoms = new Vector();
+  Vector<Atom> atoms;
 
   int number;
 
   int count;
 
-  int seqnumber;
-
-  public Residue(Vector atoms, int number, int count)
+  public Residue(Vector<Atom> resAtoms, int number, int count)
   {
-    this.atoms = atoms;
+    this.atoms = resAtoms;
     this.number = number;
     this.count = count;
   }
 
   public Atom findAtom(String name)
   {
-    for (int i = 0; i < atoms.size(); i++)
+    for (Atom atom : atoms)
     {
-      if (((Atom) atoms.elementAt(i)).name.equals(name))
+      if (atom.name.equals(name))
       {
-        return (Atom) atoms.elementAt(i);
+        return atom;
       }
     }
 
     return null;
   }
+
+  public Vector<Atom> getAtoms()
+  {
+    return this.atoms;
+  }
 }