X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FZsort.java;h=f7f2c39274ce18aeaef10f4aeddf36d944cdfcee;hb=29f633ca27df2db2790b81b1ca346d6692d4936c;hp=1e7ac4162f489bfe5cd41a2d4307a496c8f7fa16;hpb=4266cb41bf11ee3fdac840e25a8159f6796276a3;p=jalview.git

diff --git a/src/MCview/Zsort.java b/src/MCview/Zsort.java
index 1e7ac41..f7f2c39 100755
--- a/src/MCview/Zsort.java
+++ b/src/MCview/Zsort.java
@@ -1,63 +1,75 @@
 /*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/
+ * Jalview - A Sequence Alignment Editor and Viewer
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ */
 package MCview;
 
 import java.util.*;
 
+public class Zsort
+{
+  public void Zsort(Vector bonds)
+  {
+    sort(bonds, 0, bonds.size() - 1);
+  }
 
-public class Zsort {
-    public static void Zsort(Vector bonds) {
-        sort(bonds, 0, bonds.size() - 1);
-    }
-
-    public static void sort(Vector bonds, int p, int r) {
-        int q;
+  public void sort(Vector bonds, int p, int r)
+  {
+    int q;
 
-        if (p < r) {
-            q = partition(bonds, p, r);
-            sort(bonds, p, q);
-            sort(bonds, q + 1, r);
-        }
+    if (p < r)
+    {
+      q = partition(bonds, p, r);
+      sort(bonds, p, q);
+      sort(bonds, q + 1, r);
     }
+  }
 
-    private static int partition(Vector bonds, int p, int r) {
-        float x = ((Bond) bonds.elementAt(p)).start[2];
-        int i = p - 1;
-        int j = r + 1;
-        Bond tmp;
-        while (true) {
-            do {
-                j = j - 1;
-            } while ((j >= 0) && (((Bond) bonds.elementAt(j)).start[2] > x));
+  private int partition(Vector bonds, int p, int r)
+  {
+    float x = ( (Bond) bonds.elementAt(p)).start[2];
+    int i = p - 1;
+    int j = r + 1;
+    Bond tmp;
+    while (true)
+    {
+      do
+      {
+        j--;
+      }
+      while ( (j >= 0) && ( ( (Bond) bonds.elementAt(j)).start[2] > x));
 
-            do {
-                i = i + 1;
-            } while ((i < bonds.size()) &&
-                    (((Bond) bonds.elementAt(i)).start[2] < x));
+      do
+      {
+        i++;
+      }
+      while ( (i < bonds.size()) &&
+             ( ( (Bond) bonds.elementAt(i)).start[2] < x));
 
-            if (i < j) {
-                tmp = (Bond) bonds.elementAt(i);
-                bonds.setElementAt(bonds.elementAt(j), i);
-                bonds.setElementAt(tmp, j);
-            } else {
-                return j;
-            }
-        }
+      if (i < j)
+      {
+        tmp = (Bond) bonds.elementAt(i);
+        bonds.setElementAt(bonds.elementAt(j), i);
+        bonds.setElementAt(tmp, j);
+      }
+      else
+      {
+        return j;
+      }
     }
+  }
 }