X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FmyAtom.java;h=75dec3713cd58b171bf88530b8ade5609f8817ac;hb=56c4bbb0c67941f9adf823e450ccc3b4e02ea3eb;hp=93166a57163063bcbd38a50a804d78661a61209f;hpb=9b22c11a0e12a9320e41eca2cbcbe30f81eb1cb4;p=jalview.git

diff --git a/src/MCview/myAtom.java b/src/MCview/myAtom.java
index 93166a5..75dec37 100755
--- a/src/MCview/myAtom.java
+++ b/src/MCview/myAtom.java
@@ -1,55 +1,71 @@
+/*
+* Jalview - A Sequence Alignment Editor and Viewer
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+*
+* This program is free software; you can redistribute it and/or
+* modify it under the terms of the GNU General Public License
+* as published by the Free Software Foundation; either version 2
+* of the License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with this program; if not, write to the Free Software
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+*/
 package MCview;
 
-import java.util.*;
 import java.awt.*;
 
-public class myAtom {
-  float x;
-  float y;
-  float z;
-
-  public int     number;
-  public String  name;
-  public String  resName;
-  public int     resNumber;
-  public int     type;
-  public Color   color;
-  public String  chain;
-  public boolean isSelected = false;
+import java.util.*;
 
-  public myAtom(StringTokenizer str) {
 
-    this.number  = (new Integer(str.nextToken())).intValue();
-    this.name    = str.nextToken();
-    this.resName = str.nextToken();
+public class myAtom {
+    float x;
+    float y;
+    float z;
+    public int number;
+    public String name;
+    public String resName;
+    public int resNumber;
+    public int type;
+    public Color color;
+    public String chain;
+    public boolean isSelected = false;
 
-    String tmpstr = new String();
+    public myAtom(StringTokenizer str) {
+        this.number = (new Integer(str.nextToken())).intValue();
+        this.name = str.nextToken();
+        this.resName = str.nextToken();
 
-    try {
-      tmpstr         = str.nextToken();
-      this.resNumber = (new Integer(tmpstr).intValue());
-      this.chain     = "A";
-      this.color     = Color.lightGray;
+        String tmpstr = new String();
 
-    } catch(NumberFormatException e) {
-      this.chain = tmpstr;
+        try {
+            tmpstr = str.nextToken();
+            this.resNumber = (new Integer(tmpstr).intValue());
+            this.chain = "A";
+            this.color = Color.lightGray;
+        } catch (NumberFormatException e) {
+            this.chain = tmpstr;
 
-      if (tmpstr.equals("A")) {
-        this.color = Color.lightGray;
+            if (tmpstr.equals("A")) {
+                this.color = Color.lightGray;
+            } else {
+                this.color = Color.red;
+            }
 
-      } else {
-        this.color = Color.red;
-      }
+            this.resNumber = (new Integer(str.nextToken()).intValue());
+        }
 
-      this.resNumber = (new Integer(str.nextToken()).intValue());
+        this.x = (float) (new Float(str.nextToken()).floatValue());
+        this.y = (float) (new Float(str.nextToken()).floatValue());
+        this.z = (float) (new Float(str.nextToken()).floatValue());
     }
 
-    this.x = (float)(new Float(str.nextToken()).floatValue());
-    this.y = (float)(new Float(str.nextToken()).floatValue());
-    this.z = (float)(new Float(str.nextToken()).floatValue());
-  }
-
-  public void setColor(Color col) {
-    this.color = col;
-  }
+    public void setColor(Color col) {
+        this.color = col;
+    }
 }