X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fcastor.properties;fp=src%2Fcastor.properties;h=0000000000000000000000000000000000000000;hb=74393b51f368cb9f58589472d432a433d9c4386d;hp=5b174586c8ff809c08536c3648e6f0f95f085c66;hpb=7a0d503181fe41452120a8a02ca63476392aa08c;p=jalview.git diff --git a/src/castor.properties b/src/castor.properties deleted file mode 100644 index 5b17458..0000000 --- a/src/castor.properties +++ /dev/null @@ -1,254 +0,0 @@ -############################################################################### -# Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) -# Copyright (C) $$Year-Rel$$ The Jalview Authors -# -# This file is part of Jalview. -# -# Jalview is free software: you can redistribute it and/or -# modify it under the terms of the GNU General Public License -# as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. -# -# Jalview is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty -# of MERCHANTABILITY or FITNESS FOR A PARTICULAR -# PURPOSE. See the GNU General Public License for more details. -# -# You should have received a copy of the GNU General Public License along with Jalview. If not, see . -# The Jalview Authors are detailed in the 'AUTHORS' file. -############################################################################### -# THE CASTOR PROPERTIES FILE -# This file specifies values for Castor run-time which may be configured -# by the user. -# $Id$ - -# This section defines Backwards compatibility switches. -# -# Hashtable/Map default mapping. -# For backward compatibility with 0.9.5.2 and earlier. -# -#org.exolab.castor.xml.saveMapKeys=false - -# Defines the default XML parser to be used by Castor. -# The parser must implement org.xml.sax.Parser. -# -org.exolab.castor.parser=org.apache.xerces.parsers.SAXParser - -# Defines the (default) XML serializer factory to use by Castor, which must -# implement org.exolab.castor.xml.SerializerFactory; default is -# org.exolab.castor.xml.XercesXMLSerializerFactory -# -# When using Castor XML with JDK 5.0, you may switch to the XercesJDK5XMLSerializerFactory -# which will use the Xerces instance as shipped with the JDK itself; this avoids -# having to download another Xerces instance and installing it. -org.exolab.castor.xml.serializer.factory=org.exolab.castor.xml.XercesXMLSerializerFactory -#org.exolab.castor.xml.serializer.factory=org.exolab.castor.xml.XercesJDK5XMLSerializerFactory - -# Defines the NodeType for use with Java primitive types (int, long, boolean, -# etc). This value is only used by the Introspector. Valid values are either -# "attribute" or "element". By default, all primitives are marshaled as -# attributes. Uncomment the following line to change the NodeType to element. -# -#org.exolab.castor.xml.introspector.primitive.nodetype=element - -# Defines the Naming "style" or conventions to use when creating XML names -# from Java class or field names. -# Valid values are as follows: -# ----------------------------------------------------------------- -# lower (default) | All names are lowercase with hyphens -# | separating words. -# | -# | Example: personInfo = person-info -# ----------------------------------------------------------------- -# mixed | All names are mixed case, with Uppercase -# | character as the first letter of a new word. -# | -# | Example: personInfo = personInfo -# | Example: FooBar = fooBar -# ----------------------------------------------------------------- -# {Any ClassName} | Any Class which implements -# | org.exolab.castor.xml.XMLNaming -# ----------------------------------------------------------------- -# -# By default, all names are treated as the "lower" option. To preserve the -# Java mixed-case conventions, uncomment the following line. -# -#org.exolab.castor.xml.naming=mixed - -############################### -# REGULAR EXPRESSION EVALUATORS -# -# Defines the Regular Expression Evaluator to be used by Castor. -# The evaluator must implement org.exolab.castor.util.RegExpEvaluator. -# -# Uncomment the following to basically suppress Regular expressions evaluation: -#org.exolab.castor.regexp=org.exolab.castor.xml.util.AlwaysTrueRegExpEvaluator -# -# An implementation which uses the Jakarta RegExp library: -#org.exolab.castor.regexp=org.exolab.castor.util.JakartaRegExpEvaluator -# -# An implementation which uses the Jakarta ORO library: -org.exolab.castor.regexp=org.exolab.castor.util.JakartaOroEvaluator - -# True if all documents should be indented on output by default. -# Defaults to false. -# -#org.exolab.castor.indent=true - -# True if xml documents should be validated by the SAX Parser -# Defaults to false. -# -org.exolab.castor.parser.validation=false - -# True for parser to support Namespaces. -# Defaults to false. -# -org.exolab.castor.parser.namespaces=false - -# True if all documents should be validated by the marshaling framework -# Defaults to true. -# -org.exolab.castor.marshalling.validation=true - -# Comma separated list of SAX 2 features that should be enabled for the -# default parser. -# -#org.exolab.castor.sax.features= - -# Comma separated list of SAX 2 features that should be disabled for the -# default parser. -# -#org.exolab.castor.sax.features-to-disable - -# True if debugging output should be generated. -# Defaults to false. -# -org.exolab.castor.debug=false - -# List of collection handlers for Java 1.1 and Java 1.2 run-times: -# -org.exolab.castor.mapping.collections=\ - org.exolab.castor.mapping.loader.J1CollectionHandlers,\ - org.exolab.castor.mapping.loader.J2CollectionHandlers - -# List of persistence factories for the supported database servers: -# -org.exolab.castor.jdo.engines=\ - org.exolab.castor.jdo.drivers.OracleFactory,\ - org.exolab.castor.jdo.drivers.PostgreSQLFactory,\ - org.exolab.castor.jdo.drivers.SybaseFactory,\ - org.exolab.castor.jdo.drivers.SQLServerFactory,\ - org.exolab.castor.jdo.drivers.DB2Factory,\ - org.exolab.castor.jdo.drivers.InformixFactory,\ - org.exolab.castor.jdo.drivers.HsqlFactory,\ - org.exolab.castor.jdo.drivers.InstantDBFactory,\ - org.exolab.castor.jdo.drivers.InterbaseFactory,\ - org.exolab.castor.jdo.drivers.MySQLFactory,\ - org.exolab.castor.jdo.drivers.SapDbFactory,\ - org.exolab.castor.jdo.drivers.GenericFactory,\ - org.exolab.castor.jdo.drivers.DerbyFactory,\ - org.castor.jdo.drivers.PointbaseFactory,\ - org.castor.jdo.drivers.ProgressFactory - -# List of key generator factories: -# -org.exolab.castor.jdo.keyGeneratorFactories=\ - org.exolab.castor.jdo.keygen.MaxKeyGeneratorFactory,\ - org.exolab.castor.jdo.keygen.HighLowKeyGeneratorFactory,\ - org.exolab.castor.jdo.keygen.IdentityKeyGeneratorFactory,\ - org.exolab.castor.jdo.keygen.SequenceKeyGeneratorFactory,\ - org.exolab.castor.jdo.keygen.UUIDKeyGeneratorFactory - -# Collection handlers for the source code generator: -# -org.exolab.castor.builder.type.j2=\ - org.exolab.castor.builder.FieldInfoFactoryJ2 -org.exolab.castor.builder.type.j1=\ - org.exolab.castor.builder.FieldInfoFactory -org.exolab.castor.builder.type.odmg=\ - org.exolab.castor.builder.FieldInfoFactoryODMG30 - -# Configures the default time zone to apply to dates/times fetched from -# database fields (if not already part of the data). Specify same format as -# in java.util.TimeZone.getTimeZone, or the empty string to use the computer's -# local time zone. Please see http://de.wikipedia.org/wiki/Zeitzone for -# detailed information about time zones. -# -org.exolab.castor.jdo.defaultTimeZone= -#org.exolab.castor.jdo.defaultTimeZone=GMT-8:00 - -# List of TxSynchronizeable implementations: -# -#org.exolab.castor.persist.TxSynchronizable= - -# Sets the buffer size in bytes for fetching LOBs (this is dependent upon -# the JDBC driver implementation). The value below == 5k. -# -org.exolab.castor.jdo.lobBufferSize=5120 - -# True if database configuration should be initalization -# when loading it (default: true). -# -#org.exolab.castor.jdo.DatabaseInitializeAtLoad=true - -# True if proxy classes should be used for JDBC connections and -# prepared statements. -# Defaults to true. -# -org.exolab.castor.persist.useProxies=false - -# MappingLoader implementations: -# -org.castor.mapping.loaderFactories=\ - org.castor.mapping.JDOMappingLoaderFactory,\ - org.castor.mapping.XMLMappingLoaderFactory - -# Cache implementations: -# -org.castor.cache.Factories=\ - org.castor.cache.simple.NoCacheFactory,\ - org.castor.cache.simple.TimeLimitedFactory,\ - org.castor.cache.simple.CountLimitedFactory,\ - org.castor.cache.simple.UnlimitedFactory,\ - org.castor.cache.distributed.FKCacheFactory,\ - org.castor.cache.distributed.JcsCacheFactory,\ - org.castor.cache.distributed.JCacheFactory,\ - org.castor.cache.distributed.CoherenceCacheFactory,\ - org.castor.cache.distributed.OsCacheFactory,\ - org.castor.cache.hashbelt.FIFOHashbeltFactory,\ - org.castor.cache.hashbelt.LRUHashbeltFactory,\ - org.castor.cache.distributed.EHCacheFactory,\ - org.castor.cache.distributed.GigaspacesCacheFactory - -# TransactionManagerFactory implementations: -# -org.castor.transactionmanager.Factories=\ - org.castor.transactionmanager.WebSphereTransactionManagerFactory,\ - org.castor.transactionmanager.WebSphere5TransactionManagerFactory,\ - org.castor.transactionmanager.WebSphere51TransactionManagerFactory,\ - org.castor.transactionmanager.LocalTransactionManagerFactory,\ - org.castor.transactionmanager.JNDIENCTransactionManagerFactory,\ - org.castor.transactionmanager.JOTMTransactionManagerFactory - -# Selects whether the TransactionManager should be initialized at registration, -# or lazily when requested for the first time. -# Defaults to false. -# -org.castor.transactionmanager.InitializeAtRegistration=false - -# Instructs Castor JDO to use the JDBC 3.0-specific features to obtain -# the generated value of an identity column. -# Defaults to false. -# -org.castor.jdo.use.jdbc30=false - -# Specifies whether to use ANSI-compliant SQL for MS SQL Server. -# Defaults to false. -# -org.exolab.castor.jdo.sqlserver.ansi-compliant=false - -# Specifyies whether the ClassDescriptorResolver should (automatically) search -# for and consult with package mapping files (.castor.xml) to retrieve class -# descriptor information; on by default. -# Defaults to true. -# -#org.exolab.castor.xml.loadPackageMappings=false