X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fcom%2Fstevesoft%2Fpat%2FReplaceRule.java;h=4805ed4991722ad15093abf0708b9bc2d8c9e48e;hb=4231d40261fef32ce4570a6bbad0d35df44e8baf;hp=bf561433a53f19e468d6e90706d3edaabe1fe7ba;hpb=c07eb2c5794833bd0241000d6844d783fe10cb82;p=jalview.git

diff --git a/src/com/stevesoft/pat/ReplaceRule.java b/src/com/stevesoft/pat/ReplaceRule.java
index bf56143..4805ed4 100755
--- a/src/com/stevesoft/pat/ReplaceRule.java
+++ b/src/com/stevesoft/pat/ReplaceRule.java
@@ -93,7 +93,7 @@ public abstract class ReplaceRule
 
   static Regex getvar = null;
 
-  final static Regex getv()
+  private static Regex getv()
   {
     // Thanks to Michael Jimenez for pointing out the need
     // to clone getvar rather than simply returning it.
@@ -113,7 +113,7 @@ public abstract class ReplaceRule
             "\\\\c([\u0000-\uFFFF])|" + // ref 8
             "\\\\x([A-Fa-f0-9]{2})|" + // ref 9
             "\\\\([\u0000-\uFFFF])" + // ref 10
-            ")");
+            ")", "");
     getvar.optimize();
     return getvar;
   }
@@ -142,9 +142,9 @@ public abstract class ReplaceRule
           head = add(head, new StringRule(s.substring(mt, mf)));
         }
         String var = null;
-        if ((var = gv.stringMatched(1 + off)) != null
-                || (var = gv.stringMatched(2 + off)) != null
-                || (var = gv.stringMatched(5 + off)) != null)
+        if ((var = gv.stringMatchedI(1 + off)) != null
+                || (var = gv.stringMatchedI(2 + off)) != null
+                || (var = gv.stringMatchedI(5 + off)) != null)
         {
           int d = 0;
           for (int i = 0; i < var.length(); i++)
@@ -160,7 +160,7 @@ public abstract class ReplaceRule
             head = new StringRule("" + (char) d);
           }
         }
-        else if ((var = gv.stringMatched(10 + off)) != null)
+        else if ((var = gv.stringMatchedI(10 + off)) != null)
         {
           if ("QELlUu".indexOf(var) >= 0)
           {
@@ -171,9 +171,9 @@ public abstract class ReplaceRule
             head = add(head, new StringRule(var));
           }
         }
-        else if ((var = gv.stringMatched(3 + off)) != null
-                || (var = gv.stringMatched(4 + off)) != null
-                || (var = gv.stringMatched(6 + off)) != null)
+        else if ((var = gv.stringMatchedI(3 + off)) != null
+                || (var = gv.stringMatchedI(4 + off)) != null
+                || (var = gv.stringMatchedI(6 + off)) != null)
         {
           String arg = "";
           int pc;
@@ -255,7 +255,7 @@ public abstract class ReplaceRule
             head = add(head, new StringRule("${" + var + "}"));
           }
         }
-        else if ((var = gv.stringMatched(7 + off)) != null)
+        else if ((var = gv.stringMatchedI(7 + off)) != null)
         {
           char c = var.charAt(0);
           if (c == 'n')
@@ -287,7 +287,7 @@ public abstract class ReplaceRule
             head = add(head, new StringRule("" + (char) 12));
           }
         }
-        else if ((var = gv.stringMatched(8 + off)) != null)
+        else if ((var = gv.stringMatchedI(8 + off)) != null)
         {
           char c = var.charAt(0);
           if (c < Ctrl.cmap.length)
@@ -296,7 +296,7 @@ public abstract class ReplaceRule
           }
           head = add(head, new StringRule("" + c));
         }
-        else if ((var = gv.stringMatched(9 + off)) != null)
+        else if ((var = gv.stringMatchedI(9 + off)) != null)
         {
           int d = 16 * getHexDigit(var.charAt(0))
                   + getHexDigit(var.charAt(1));