X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fcom%2Fstevesoft%2Fpat%2FReplacer.java;h=ce512a5d31f007aa5fa4b425b8bc1ec29f599833;hb=4231d40261fef32ce4570a6bbad0d35df44e8baf;hp=b886f6abb7d10a00fab2e5ce0930b23b6e44e691;hpb=c07eb2c5794833bd0241000d6844d783fe10cb82;p=jalview.git

diff --git a/src/com/stevesoft/pat/Replacer.java b/src/com/stevesoft/pat/Replacer.java
index b886f6a..ce512a5 100755
--- a/src/com/stevesoft/pat/Replacer.java
+++ b/src/com/stevesoft/pat/Replacer.java
@@ -7,7 +7,7 @@
 //
 package com.stevesoft.pat;
 
-import jalview.util.MessageManager;
+import com.stevesoft.pat.MessageManager;
 
 import com.stevesoft.pat.wrap.*;
 
@@ -182,7 +182,7 @@ public class Replacer
     {
       throw new NullPointerException(MessageManager.getString("exception.replace_null_regex_pointer"));
     }
-    if (rh.me._search(s, start, end))
+    if (rh.me._searchLike(s, start, end))
     {
       int rmn = rh.me.matchedTo();
       if (rh.me.charsMatched() == 0 && !isSpecial(rh.me.getReplaceRule()))
@@ -193,7 +193,7 @@ public class Replacer
       apply(rh.me);
       if (!first)
       {
-        for (int i = rmn; !want_more_text && rh.me._search(s, i, end); i = rmn)
+        for (int i = rmn; !want_more_text && rh.me._searchLike(s, i, end); i = rmn)
         {
           rmn = rh.me.matchedTo();
           if (rh.me.charsMatched() == 0)
@@ -245,7 +245,7 @@ public class Replacer
       int rmf = r.matchedFrom();
       for (int ii = pos; ii < rmf; ii++)
       {
-        sb.append(src.charAt(ii));
+        sb.appendC(src.charAt(ii));
       }
 
       for (ReplaceRule x = rp; x != null; x = x.next)
@@ -315,7 +315,7 @@ public class Replacer
     int s_end = src.length();
     for (int ii = pos; ii < s_end; ii++)
     {
-      sb.append(src.charAt(ii));
+      sb.appendC(src.charAt(ii));
     }
     src = null;
     lastMatchedTo = pos;