X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fcom%2Fstevesoft%2Fpat%2FSkip2.java;h=5f6bb5a814b8713b048b0e63deb603315d8a3d92;hb=d46767951738159851e0ef24493e7e9f1a01e02c;hp=ca1c5a8d2cfc8f8e16f83aa7306978fd93f6a254;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git

diff --git a/src/com/stevesoft/pat/Skip2.java b/src/com/stevesoft/pat/Skip2.java
index ca1c5a8..5f6bb5a 100755
--- a/src/com/stevesoft/pat/Skip2.java
+++ b/src/com/stevesoft/pat/Skip2.java
@@ -1,55 +1,57 @@
-//
-// This software is now distributed according to
-// the Lesser Gnu Public License.  Please see
-// http://www.gnu.org/copyleft/lesser.txt for
-// the details.
-//    -- Happy Computing!
-//
-package com.stevesoft.pat;
-
-/** This is the same as Skip, except it needs a minimum
-    of two characters in the initializing String.
-    @see com.stevesoft.pat.Skip
-    @see com.stevesoft.pat.SkipBMH
- */
-public class Skip2
-    extends Skip
-{
-  int c1, mask1;
-  public Skip2(String s, boolean ign, int offset)
-  {
-    super(s, ign, offset);
-    c1 = s.charAt(1);
-    m1 = 2 == s.length();
-    if (ign)
-    {
-      mask1 = mkmask(c1);
-    }
-    else
-    {
-      mask1 = 0;
-    }
-  }
-
-  public int find(StringLike s, int start, int end)
-  {
-    if (start > end)
-    {
-      return -1;
-    }
-    start += offset;
-    int vend = min(s.length() - 2, end + offset);
-    for (int i = start; i <= vend; i++)
-    {
-      if (0 == (s.charAt(i) & mask) && 0 == (s.charAt(i + 1) & mask1))
-      {
-        //if(m1||s.regionMatches(ign,i,src,0,src.length()) )
-        if (m1 || CaseMgr.regionMatches(s, ign, i, src, 0, src.length()))
-        {
-          return i - offset;
-        }
-      }
-    }
-    return -1;
-  }
-}
+//
+// This software is now distributed according to
+// the Lesser Gnu Public License.  Please see
+// http://www.gnu.org/copyleft/lesser.txt for
+// the details.
+//    -- Happy Computing!
+//
+package com.stevesoft.pat;
+
+/**
+ * This is the same as Skip, except it needs a minimum of two characters in the
+ * initializing String.
+ * 
+ * @see com.stevesoft.pat.Skip
+ * @see com.stevesoft.pat.SkipBMH
+ */
+public class Skip2 extends Skip
+{
+  int c1, mask1;
+
+  public Skip2(String s, boolean ign, int offset)
+  {
+    super(s, ign, offset);
+    c1 = s.charAt(1);
+    m1 = 2 == s.length();
+    if (ign)
+    {
+      mask1 = mkmask(c1);
+    }
+    else
+    {
+      mask1 = 0;
+    }
+  }
+
+  public int find(StringLike s, int start, int end)
+  {
+    if (start > end)
+    {
+      return -1;
+    }
+    start += offset;
+    int vend = min(s.length() - 2, end + offset);
+    for (int i = start; i <= vend; i++)
+    {
+      if (0 == (s.charAt(i) & mask) && 0 == (s.charAt(i + 1) & mask1))
+      {
+        // if(m1||s.regionMatches(ign,i,src,0,src.length()) )
+        if (m1 || CaseMgr.regionMatches(s, ign, i, src, 0, src.length()))
+        {
+          return i - offset;
+        }
+      }
+    }
+    return -1;
+  }
+}