X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fcom%2Fstevesoft%2Fpat%2FSkip2.java;h=5f6bb5a814b8713b048b0e63deb603315d8a3d92;hb=e7b89bef035333acf6c974071831b9edfd942302;hp=f2b03cae4b007564ab36b1ceab0d2fcf2df579cb;hpb=c40cf903f740a72ab63dd1abc10fa33450ce660d;p=jalview.git

diff --git a/src/com/stevesoft/pat/Skip2.java b/src/com/stevesoft/pat/Skip2.java
index f2b03ca..5f6bb5a 100755
--- a/src/com/stevesoft/pat/Skip2.java
+++ b/src/com/stevesoft/pat/Skip2.java
@@ -1,38 +1,57 @@
-//
-// This software is now distributed according to
-// the Lesser Gnu Public License.  Please see
-// http://www.gnu.org/copyleft/lesser.txt for
-// the details.
-//    -- Happy Computing!
-//
-package com.stevesoft.pat;
-
-/** This is the same as Skip, except it needs a minimum
-    of two characters in the initializing String.
-    @see com.stevesoft.pat.Skip
-    @see com.stevesoft.pat.SkipBMH
-    */
-public class Skip2 extends Skip {
-    int c1,mask1;
-    public Skip2(String s,boolean ign,int offset) {
-        super(s,ign,offset);
-        c1 = s.charAt(1);
-        m1 = 2==s.length();
-        if(ign) {
-            mask1=mkmask(c1);
-        } else
-            mask1 = 0;
-    }
-    public int find(StringLike s,int start,int end) {
-        if(start > end) return -1;
-        start += offset;
-        int vend = min(s.length()-2,end+offset);
-        for(int i=start;i<=vend;i++)
-            if(0 == (s.charAt(i)&mask) && 0 == (s.charAt(i+1)&mask1)) {
-                //if(m1||s.regionMatches(ign,i,src,0,src.length()) )
-                if(m1||CaseMgr.regionMatches(s,ign,i,src,0,src.length()) )
-                    return i-offset;
-            }
-        return -1;
-    }
-}
+//
+// This software is now distributed according to
+// the Lesser Gnu Public License.  Please see
+// http://www.gnu.org/copyleft/lesser.txt for
+// the details.
+//    -- Happy Computing!
+//
+package com.stevesoft.pat;
+
+/**
+ * This is the same as Skip, except it needs a minimum of two characters in the
+ * initializing String.
+ * 
+ * @see com.stevesoft.pat.Skip
+ * @see com.stevesoft.pat.SkipBMH
+ */
+public class Skip2 extends Skip
+{
+  int c1, mask1;
+
+  public Skip2(String s, boolean ign, int offset)
+  {
+    super(s, ign, offset);
+    c1 = s.charAt(1);
+    m1 = 2 == s.length();
+    if (ign)
+    {
+      mask1 = mkmask(c1);
+    }
+    else
+    {
+      mask1 = 0;
+    }
+  }
+
+  public int find(StringLike s, int start, int end)
+  {
+    if (start > end)
+    {
+      return -1;
+    }
+    start += offset;
+    int vend = min(s.length() - 2, end + offset);
+    for (int i = start; i <= vend; i++)
+    {
+      if (0 == (s.charAt(i) & mask) && 0 == (s.charAt(i + 1) & mask1))
+      {
+        // if(m1||s.regionMatches(ign,i,src,0,src.length()) )
+        if (m1 || CaseMgr.regionMatches(s, ign, i, src, 0, src.length()))
+        {
+          return i - offset;
+        }
+      }
+    }
+    return -1;
+  }
+}