X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fext%2Fvamsas%2FJpredSoapBindingStub.java;h=079ce853817ace1bfcc61f05ac0c3c3599ff9c9b;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=4c8fc7f0ec4e5bcec790e164215aeb9b852b9afe;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git diff --git a/src/ext/vamsas/JpredSoapBindingStub.java b/src/ext/vamsas/JpredSoapBindingStub.java index 4c8fc7f..079ce85 100755 --- a/src/ext/vamsas/JpredSoapBindingStub.java +++ b/src/ext/vamsas/JpredSoapBindingStub.java @@ -1,18 +1,34 @@ -/** - * JpredSoapBindingStub.java - * - * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9) + * Copyright (C) 2015 The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ - package ext.vamsas; -public class JpredSoapBindingStub - extends org.apache.axis.client.Stub implements ext.vamsas.Jpred +public class JpredSoapBindingStub extends org.apache.axis.client.Stub + implements ext.vamsas.Jpred { private java.util.Vector cachedSerClasses = new java.util.Vector(); + private java.util.Vector cachedSerQNames = new java.util.Vector(); + private java.util.Vector cachedSerFactories = new java.util.Vector(); + private java.util.Vector cachedDeserFactories = new java.util.Vector(); static org.apache.axis.description.OperationDesc[] _operations; @@ -29,12 +45,11 @@ public class JpredSoapBindingStub oper = new org.apache.axis.description.OperationDesc(); oper.setName("predict"); oper.addParameter(new javax.xml.namespace.QName("", "seq"), - new javax.xml. - namespace.QName("simple.objects.vamsas", "Sequence"), - vamsas.objects.simple.Sequence.class, - org.apache.axis.description.ParameterDesc.IN, false, false); + new javax.xml.namespace.QName("simple.objects.vamsas", + "Sequence"), vamsas.objects.simple.Sequence.class, + org.apache.axis.description.ParameterDesc.IN, false, false); oper.setReturnType(new javax.xml.namespace.QName( - "http://www.w3.org/2001/XMLSchema", "string")); + "http://www.w3.org/2001/XMLSchema", "string")); oper.setReturnClass(java.lang.String.class); oper.setReturnQName(new javax.xml.namespace.QName("", "predictReturn")); oper.setStyle(org.apache.axis.constants.Style.RPC); @@ -44,15 +59,15 @@ public class JpredSoapBindingStub oper = new org.apache.axis.description.OperationDesc(); oper.setName("predictOnMsa"); oper.addParameter(new javax.xml.namespace.QName("", "msf"), - new javax.xml. - namespace.QName("http://simple.objects.vamsas", - "Msfalignment"), - vamsas.objects.simple.Msfalignment.class, - org.apache.axis.description.ParameterDesc.IN, false, false); + new javax.xml.namespace.QName("http://simple.objects.vamsas", + "Msfalignment"), + vamsas.objects.simple.Msfalignment.class, + org.apache.axis.description.ParameterDesc.IN, false, false); oper.setReturnType(new javax.xml.namespace.QName( - "http://www.w3.org/2001/XMLSchema", "string")); + "http://www.w3.org/2001/XMLSchema", "string")); oper.setReturnClass(java.lang.String.class); - oper.setReturnQName(new javax.xml.namespace.QName("", "predictOnMsaReturn")); + oper.setReturnQName(new javax.xml.namespace.QName("", + "predictOnMsaReturn")); oper.setStyle(org.apache.axis.constants.Style.RPC); oper.setUse(org.apache.axis.constants.Use.ENCODED); _operations[1] = oper; @@ -60,14 +75,15 @@ public class JpredSoapBindingStub oper = new org.apache.axis.description.OperationDesc(); oper.setName("getpredict"); oper.addParameter(new javax.xml.namespace.QName("", "job_id"), - new javax. - xml.namespace.QName("http://www.w3.org/2001/XMLSchema", - "string"), java.lang.String.class, - org.apache.axis.description.ParameterDesc.IN, false, false); + new javax.xml.namespace.QName( + "http://www.w3.org/2001/XMLSchema", "string"), + java.lang.String.class, + org.apache.axis.description.ParameterDesc.IN, false, false); oper.setReturnType(new javax.xml.namespace.QName( - "http://simple.objects.vamsas", "Secstructpred")); + "http://simple.objects.vamsas", "Secstructpred")); oper.setReturnClass(vamsas.objects.simple.Secstructpred.class); - oper.setReturnQName(new javax.xml.namespace.QName("", "getpredictReturn")); + oper.setReturnQName(new javax.xml.namespace.QName("", + "getpredictReturn")); oper.setStyle(org.apache.axis.constants.Style.RPC); oper.setUse(org.apache.axis.constants.Use.ENCODED); _operations[2] = oper; @@ -75,12 +91,12 @@ public class JpredSoapBindingStub oper = new org.apache.axis.description.OperationDesc(); oper.setName("getresult"); oper.addParameter(new javax.xml.namespace.QName("", "job_id"), - new javax. - xml.namespace.QName("http://www.w3.org/2001/XMLSchema", - "string"), java.lang.String.class, - org.apache.axis.description.ParameterDesc.IN, false, false); + new javax.xml.namespace.QName( + "http://www.w3.org/2001/XMLSchema", "string"), + java.lang.String.class, + org.apache.axis.description.ParameterDesc.IN, false, false); oper.setReturnType(new javax.xml.namespace.QName( - "http://simple.objects.vamsas", "JpredResult")); + "http://simple.objects.vamsas", "JpredResult")); oper.setReturnClass(vamsas.objects.simple.JpredResult.class); oper.setReturnQName(new javax.xml.namespace.QName("", "getresultReturn")); oper.setStyle(org.apache.axis.constants.Style.RPC); @@ -89,22 +105,20 @@ public class JpredSoapBindingStub } - public JpredSoapBindingStub() - throws org.apache.axis.AxisFault + public JpredSoapBindingStub() throws org.apache.axis.AxisFault { this(null); } public JpredSoapBindingStub(java.net.URL endpointURL, - javax.xml.rpc.Service service) - throws org.apache.axis.AxisFault + javax.xml.rpc.Service service) throws org.apache.axis.AxisFault { this(service); super.cachedEndpoint = endpointURL; } public JpredSoapBindingStub(javax.xml.rpc.Service service) - throws org.apache.axis.AxisFault + throws org.apache.axis.AxisFault { if (service == null) { @@ -117,18 +131,26 @@ public class JpredSoapBindingStub java.lang.Class cls; javax.xml.namespace.QName qName; java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class; - java.lang.Class beandf = org.apache.axis.encoding.ser. - BeanDeserializerFactory.class; - /*java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class; - java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class; - java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class; - java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class; - java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class; - java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class; - java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class; - java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;*/ + java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class; + /* + * java.lang.Class enumsf = + * org.apache.axis.encoding.ser.EnumSerializerFactory.class; java.lang.Class + * enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class; + * java.lang.Class arraysf = + * org.apache.axis.encoding.ser.ArraySerializerFactory.class; + * java.lang.Class arraydf = + * org.apache.axis.encoding.ser.ArrayDeserializerFactory.class; + * java.lang.Class simplesf = + * org.apache.axis.encoding.ser.SimpleSerializerFactory.class; + * java.lang.Class simpledf = + * org.apache.axis.encoding.ser.SimpleDeserializerFactory.class; + * java.lang.Class simplelistsf = + * org.apache.axis.encoding.ser.SimpleListSerializerFactory.class; + * java.lang.Class simplelistdf = + * org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class; + */ qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", - "JpredResult"); + "JpredResult"); cachedSerQNames.add(qName); cls = vamsas.objects.simple.JpredResult.class; cachedSerClasses.add(cls); @@ -143,7 +165,7 @@ public class JpredSoapBindingStub cachedDeserFactories.add(beandf); qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", - "Secstructpred"); + "Secstructpred"); cachedSerQNames.add(qName); cls = vamsas.objects.simple.Secstructpred.class; cachedSerClasses.add(cls); @@ -151,14 +173,15 @@ public class JpredSoapBindingStub cachedDeserFactories.add(beandf); qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", - "Msfalignment"); + "Msfalignment"); cachedSerQNames.add(qName); cls = vamsas.objects.simple.Msfalignment.class; cachedSerClasses.add(cls); cachedSerFactories.add(beansf); cachedDeserFactories.add(beandf); - qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence"); + qName = new javax.xml.namespace.QName("simple.objects.vamsas", + "Sequence"); cachedSerQNames.add(qName); cls = vamsas.objects.simple.Sequence.class; cachedSerClasses.add(cls); @@ -168,12 +191,12 @@ public class JpredSoapBindingStub } protected org.apache.axis.client.Call createCall() - throws java.rmi.RemoteException + throws java.rmi.RemoteException { try { - org.apache.axis.client.Call _call = - (org.apache.axis.client.Call)super.service.createCall(); + org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service + .createCall(); if (super.maintainSessionSet) { _call.setMaintainSession(super.maintainSession); @@ -214,33 +237,31 @@ public class JpredSoapBindingStub if (firstCall()) { // must set encoding style before registering serializers - _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants. - SOAP11_CONSTANTS); + _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC); for (int i = 0; i < cachedSerFactories.size(); ++i) { java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i); - javax.xml.namespace.QName qName = - (javax.xml.namespace.QName) cachedSerQNames.get(i); - java.lang.Class sf = (java.lang.Class) - cachedSerFactories.get(i); - java.lang.Class df = (java.lang.Class) - cachedDeserFactories.get(i); + javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames + .get(i); + java.lang.Class sf = (java.lang.Class) cachedSerFactories + .get(i); + java.lang.Class df = (java.lang.Class) cachedDeserFactories + .get(i); _call.registerTypeMapping(cls, qName, sf, df, false); } } } return _call; - } - catch (java.lang.Throwable _t) + } catch (java.lang.Throwable _t) { throw new org.apache.axis.AxisFault( - "Failure trying to get the Call object", _t); + "Failure trying to get the Call object", _t); } } public java.lang.String predict(vamsas.objects.simple.Sequence seq) - throws java.rmi.RemoteException + throws java.rmi.RemoteException { if (super.cachedEndpoint == null) { @@ -251,12 +272,12 @@ public class JpredSoapBindingStub _call.setUseSOAPAction(true); _call.setSOAPActionURI(""); _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); - _call.setOperationName(new javax.xml.namespace.QName("vamsas", "predict")); + _call.setOperationName(new javax.xml.namespace.QName("vamsas", + "predict")); setRequestHeaders(_call); setAttachments(_call); - java.lang.Object _resp = _call.invoke(new java.lang.Object[] - {seq}); + java.lang.Object _resp = _call.invoke(new java.lang.Object[] { seq }); if (_resp instanceof java.rmi.RemoteException) { @@ -268,17 +289,17 @@ public class JpredSoapBindingStub try { return (java.lang.String) _resp; - } - catch (java.lang.Exception _exception) + } catch (java.lang.Exception _exception) { - return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, - java.lang.String.class); + return (java.lang.String) org.apache.axis.utils.JavaUtils.convert( + _resp, java.lang.String.class); } } } - public java.lang.String predictOnMsa(vamsas.objects.simple.Msfalignment msf) - throws java.rmi.RemoteException + public java.lang.String predictOnMsa( + vamsas.objects.simple.Msfalignment msf) + throws java.rmi.RemoteException { if (super.cachedEndpoint == null) { @@ -290,12 +311,11 @@ public class JpredSoapBindingStub _call.setSOAPActionURI(""); _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); _call.setOperationName(new javax.xml.namespace.QName("vamsas", - "predictOnMsa")); + "predictOnMsa")); setRequestHeaders(_call); setAttachments(_call); - java.lang.Object _resp = _call.invoke(new java.lang.Object[] - {msf}); + java.lang.Object _resp = _call.invoke(new java.lang.Object[] { msf }); if (_resp instanceof java.rmi.RemoteException) { @@ -307,17 +327,16 @@ public class JpredSoapBindingStub try { return (java.lang.String) _resp; - } - catch (java.lang.Exception _exception) + } catch (java.lang.Exception _exception) { - return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, - java.lang.String.class); + return (java.lang.String) org.apache.axis.utils.JavaUtils.convert( + _resp, java.lang.String.class); } } } - public vamsas.objects.simple.Secstructpred getpredict(java.lang.String job_id) - throws java.rmi.RemoteException + public vamsas.objects.simple.Secstructpred getpredict( + java.lang.String job_id) throws java.rmi.RemoteException { if (super.cachedEndpoint == null) { @@ -328,12 +347,13 @@ public class JpredSoapBindingStub _call.setUseSOAPAction(true); _call.setSOAPActionURI(""); _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); - _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getpredict")); + _call.setOperationName(new javax.xml.namespace.QName("vamsas", + "getpredict")); setRequestHeaders(_call); setAttachments(_call); - java.lang.Object _resp = _call.invoke(new java.lang.Object[] - {job_id}); + java.lang.Object _resp = _call + .invoke(new java.lang.Object[] { job_id }); if (_resp instanceof java.rmi.RemoteException) { @@ -345,17 +365,16 @@ public class JpredSoapBindingStub try { return (vamsas.objects.simple.Secstructpred) _resp; - } - catch (java.lang.Exception _exception) + } catch (java.lang.Exception _exception) { - return (vamsas.objects.simple.Secstructpred) org.apache.axis.utils. - JavaUtils.convert(_resp, vamsas.objects.simple.Secstructpred.class); + return (vamsas.objects.simple.Secstructpred) org.apache.axis.utils.JavaUtils + .convert(_resp, vamsas.objects.simple.Secstructpred.class); } } } public vamsas.objects.simple.JpredResult getresult(java.lang.String job_id) - throws java.rmi.RemoteException + throws java.rmi.RemoteException { if (super.cachedEndpoint == null) { @@ -366,12 +385,13 @@ public class JpredSoapBindingStub _call.setUseSOAPAction(true); _call.setSOAPActionURI(""); _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); - _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getresult")); + _call.setOperationName(new javax.xml.namespace.QName("vamsas", + "getresult")); setRequestHeaders(_call); setAttachments(_call); - java.lang.Object _resp = _call.invoke(new java.lang.Object[] - {job_id}); + java.lang.Object _resp = _call + .invoke(new java.lang.Object[] { job_id }); if (_resp instanceof java.rmi.RemoteException) { @@ -383,11 +403,10 @@ public class JpredSoapBindingStub try { return (vamsas.objects.simple.JpredResult) _resp; - } - catch (java.lang.Exception _exception) + } catch (java.lang.Exception _exception) { - return (vamsas.objects.simple.JpredResult) org.apache.axis.utils. - JavaUtils.convert(_resp, vamsas.objects.simple.JpredResult.class); + return (vamsas.objects.simple.JpredResult) org.apache.axis.utils.JavaUtils + .convert(_resp, vamsas.objects.simple.JpredResult.class); } } }