X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fext%2Fvamsas%2FJpredSoapBindingStub.java;h=079ce853817ace1bfcc61f05ac0c3c3599ff9c9b;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=bed6fa313920e342418d3578c137606e56d2d091;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git

diff --git a/src/ext/vamsas/JpredSoapBindingStub.java b/src/ext/vamsas/JpredSoapBindingStub.java
index bed6fa3..079ce85 100755
--- a/src/ext/vamsas/JpredSoapBindingStub.java
+++ b/src/ext/vamsas/JpredSoapBindingStub.java
@@ -1,389 +1,414 @@
-/**
- * JpredSoapBindingStub.java
- *
- * This file was auto-generated from WSDL
- * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
- */
-
 /*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/
-package ext.vamsas;
-
-public class JpredSoapBindingStub extends org.apache.axis.client.Stub
-    implements ext.vamsas.JPredWS {
-    static org.apache.axis.description.OperationDesc[] _operations;
-
-    static {
-        _operations = new org.apache.axis.description.OperationDesc[4];
-        _initOperationDesc1();
-    }
-
-    private java.util.Vector cachedSerClasses = new java.util.Vector();
-    private java.util.Vector cachedSerQNames = new java.util.Vector();
-    private java.util.Vector cachedSerFactories = new java.util.Vector();
-    private java.util.Vector cachedDeserFactories = new java.util.Vector();
-
-    public JpredSoapBindingStub() throws org.apache.axis.AxisFault {
-        this(null);
-    }
-
-    public JpredSoapBindingStub(java.net.URL endpointURL,
-        javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
-        this(service);
-        super.cachedEndpoint = endpointURL;
-    }
-
-    public JpredSoapBindingStub(javax.xml.rpc.Service service)
-        throws org.apache.axis.AxisFault {
-        if (service == null) {
-            super.service = new org.apache.axis.client.Service();
-        } else {
-            super.service = service;
-        }
-
-        java.lang.Class cls;
-        javax.xml.namespace.QName qName;
-        java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
-        java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
-        java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
-        java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
-        java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
-        java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
-        java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
-        java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
-        java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
-        java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
-        qName = new javax.xml.namespace.QName("http://dataTypes.vamsas",
-                "Sequence");
-        cachedSerQNames.add(qName);
-        cls = ext.vamsas.Sequence.class;
-        cachedSerClasses.add(cls);
-        cachedSerFactories.add(beansf);
-        cachedDeserFactories.add(beandf);
-
-        qName = new javax.xml.namespace.QName("http://dataTypes.vamsas",
-                "Secstructpred");
-        cachedSerQNames.add(qName);
-        cls = ext.vamsas.Secstructpred.class;
-        cachedSerClasses.add(cls);
-        cachedSerFactories.add(beansf);
-        cachedDeserFactories.add(beandf);
-
-        qName = new javax.xml.namespace.QName("http://dataTypes.vamsas",
-                "Msfalignment");
-        cachedSerQNames.add(qName);
-        cls = ext.vamsas.Msfalignment.class;
-        cachedSerClasses.add(cls);
-        cachedSerFactories.add(beansf);
-        cachedDeserFactories.add(beandf);
-
-        qName = new javax.xml.namespace.QName("http://dataTypes.vamsas",
-                "JpredResult");
-        cachedSerQNames.add(qName);
-        cls = ext.vamsas.JpredResult.class;
-        cachedSerClasses.add(cls);
-        cachedSerFactories.add(beansf);
-        cachedDeserFactories.add(beandf);
-
-        qName = new javax.xml.namespace.QName("http://dataTypes.vamsas",
-                "Result");
-        cachedSerQNames.add(qName);
-        cls = ext.vamsas.Result.class;
-        cachedSerClasses.add(cls);
-        cachedSerFactories.add(beansf);
-        cachedDeserFactories.add(beandf);
-    }
-
-    private static void _initOperationDesc1() {
-        org.apache.axis.description.OperationDesc oper;
-        oper = new org.apache.axis.description.OperationDesc();
-        oper.setName("predict");
-        oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"),
-            new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence"),
-            ext.vamsas.Sequence.class,
-            org.apache.axis.description.ParameterDesc.IN, false, false);
-        oper.setReturnType(new javax.xml.namespace.QName(
-                "http://www.w3.org/2001/XMLSchema", "string"));
-        oper.setReturnClass(java.lang.String.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("vamsas",
-                "predictReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
-        oper.setUse(org.apache.axis.constants.Use.LITERAL);
-        _operations[0] = oper;
-
-        oper = new org.apache.axis.description.OperationDesc();
-        oper.setName("predictOnMsa");
-        oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"),
-            new javax.xml.namespace.QName("http://dataTypes.vamsas",
-                "Msfalignment"), ext.vamsas.Msfalignment.class,
-            org.apache.axis.description.ParameterDesc.IN, false, false);
-        oper.setReturnType(new javax.xml.namespace.QName(
-                "http://www.w3.org/2001/XMLSchema", "string"));
-        oper.setReturnClass(java.lang.String.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("vamsas",
-                "predictOnMsaReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
-        oper.setUse(org.apache.axis.constants.Use.LITERAL);
-        _operations[1] = oper;
-
-        oper = new org.apache.axis.description.OperationDesc();
-        oper.setName("getpredict");
-        oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"),
-            new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema",
-                "string"), java.lang.String.class,
-            org.apache.axis.description.ParameterDesc.IN, false, false);
-        oper.setReturnType(new javax.xml.namespace.QName(
-                "http://dataTypes.vamsas", "Secstructpred"));
-        oper.setReturnClass(ext.vamsas.Secstructpred.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("vamsas",
-                "getpredictReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
-        oper.setUse(org.apache.axis.constants.Use.LITERAL);
-        _operations[2] = oper;
-
-        oper = new org.apache.axis.description.OperationDesc();
-        oper.setName("getresult");
-        oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"),
-            new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema",
-                "string"), java.lang.String.class,
-            org.apache.axis.description.ParameterDesc.IN, false, false);
-        oper.setReturnType(new javax.xml.namespace.QName(
-                "http://dataTypes.vamsas", "JpredResult"));
-        oper.setReturnClass(ext.vamsas.JpredResult.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("vamsas",
-                "getresultReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
-        oper.setUse(org.apache.axis.constants.Use.LITERAL);
-        _operations[3] = oper;
-    }
-
-    protected org.apache.axis.client.Call createCall()
-        throws java.rmi.RemoteException {
-        try {
-            org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service.createCall();
-
-            if (super.maintainSessionSet) {
-                _call.setMaintainSession(super.maintainSession);
-            }
-
-            if (super.cachedUsername != null) {
-                _call.setUsername(super.cachedUsername);
-            }
-
-            if (super.cachedPassword != null) {
-                _call.setPassword(super.cachedPassword);
-            }
-
-            if (super.cachedEndpoint != null) {
-                _call.setTargetEndpointAddress(super.cachedEndpoint);
-            }
-
-            if (super.cachedTimeout != null) {
-                _call.setTimeout(super.cachedTimeout);
-            }
-
-            if (super.cachedPortName != null) {
-                _call.setPortName(super.cachedPortName);
-            }
-
-            java.util.Enumeration keys = super.cachedProperties.keys();
-
-            while (keys.hasMoreElements()) {
-                java.lang.String key = (java.lang.String) keys.nextElement();
-                _call.setProperty(key, super.cachedProperties.get(key));
-            }
-
-            // All the type mapping information is registered
-            // when the first call is made.
-            // The type mapping information is actually registered in
-            // the TypeMappingRegistry of the service, which
-            // is the reason why registration is only needed for the first call.
-            synchronized (this) {
-                if (firstCall()) {
-                    // must set encoding style before registering serializers
-                    _call.setEncodingStyle(null);
-
-                    for (int i = 0; i < cachedSerFactories.size(); ++i) {
-                        java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
-                        javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames.get(i);
-                        java.lang.Class sf = (java.lang.Class) cachedSerFactories.get(i);
-                        java.lang.Class df = (java.lang.Class) cachedDeserFactories.get(i);
-                        _call.registerTypeMapping(cls, qName, sf, df, false);
-                    }
-                }
-            }
-
-            return _call;
-        } catch (java.lang.Throwable _t) {
-            throw new org.apache.axis.AxisFault("Failure trying to get the Call object",
-                _t);
-        }
-    }
-
-    public java.lang.String predict(ext.vamsas.Sequence in0)
-        throws java.rmi.RemoteException {
-        if (super.cachedEndpoint == null) {
-            throw new org.apache.axis.NoEndPointException();
-        }
-
-        org.apache.axis.client.Call _call = createCall();
-        _call.setOperation(_operations[0]);
-        _call.setUseSOAPAction(true);
-        _call.setSOAPActionURI("");
-        _call.setEncodingStyle(null);
-        _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
-            Boolean.FALSE);
-        _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
-            Boolean.FALSE);
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas", "predict"));
-
-        setRequestHeaders(_call);
-        setAttachments(_call);
-
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] { in0 });
-
-        if (_resp instanceof java.rmi.RemoteException) {
-            throw (java.rmi.RemoteException) _resp;
-        } else {
-            extractAttachments(_call);
-
-            try {
-                return (java.lang.String) _resp;
-            } catch (java.lang.Exception _exception) {
-                return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp,
-                    java.lang.String.class);
-            }
-        }
-    }
-
-    public java.lang.String predictOnMsa(ext.vamsas.Msfalignment in0)
-        throws java.rmi.RemoteException {
-        if (super.cachedEndpoint == null) {
-            throw new org.apache.axis.NoEndPointException();
-        }
-
-        org.apache.axis.client.Call _call = createCall();
-        _call.setOperation(_operations[1]);
-        _call.setUseSOAPAction(true);
-        _call.setSOAPActionURI("");
-        _call.setEncodingStyle(null);
-        _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
-            Boolean.FALSE);
-        _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
-            Boolean.FALSE);
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas",
-                "predictOnMsa"));
-
-        setRequestHeaders(_call);
-        setAttachments(_call);
-
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] { in0 });
-
-        if (_resp instanceof java.rmi.RemoteException) {
-            throw (java.rmi.RemoteException) _resp;
-        } else {
-            extractAttachments(_call);
-
-            try {
-                return (java.lang.String) _resp;
-            } catch (java.lang.Exception _exception) {
-                return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp,
-                    java.lang.String.class);
-            }
-        }
-    }
-
-    public ext.vamsas.Secstructpred getpredict(java.lang.String in0)
-        throws java.rmi.RemoteException {
-        if (super.cachedEndpoint == null) {
-            throw new org.apache.axis.NoEndPointException();
-        }
-
-        org.apache.axis.client.Call _call = createCall();
-        _call.setOperation(_operations[2]);
-        _call.setUseSOAPAction(true);
-        _call.setSOAPActionURI("");
-        _call.setEncodingStyle(null);
-        _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
-            Boolean.FALSE);
-        _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
-            Boolean.FALSE);
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas",
-                "getpredict"));
-
-        setRequestHeaders(_call);
-        setAttachments(_call);
-
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] { in0 });
-
-        if (_resp instanceof java.rmi.RemoteException) {
-            throw (java.rmi.RemoteException) _resp;
-        } else {
-            extractAttachments(_call);
-
-            try {
-                return (ext.vamsas.Secstructpred) _resp;
-            } catch (java.lang.Exception _exception) {
-                return (ext.vamsas.Secstructpred) org.apache.axis.utils.JavaUtils.convert(_resp,
-                    ext.vamsas.Secstructpred.class);
-            }
-        }
-    }
-
-    public ext.vamsas.JpredResult getresult(java.lang.String in0)
-        throws java.rmi.RemoteException {
-        if (super.cachedEndpoint == null) {
-            throw new org.apache.axis.NoEndPointException();
-        }
-
-        org.apache.axis.client.Call _call = createCall();
-        _call.setOperation(_operations[3]);
-        _call.setUseSOAPAction(true);
-        _call.setSOAPActionURI("");
-        _call.setEncodingStyle(null);
-        _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
-            Boolean.FALSE);
-        _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
-            Boolean.FALSE);
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas",
-                "getresult"));
-
-        setRequestHeaders(_call);
-        setAttachments(_call);
-
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] { in0 });
-
-        if (_resp instanceof java.rmi.RemoteException) {
-            throw (java.rmi.RemoteException) _resp;
-        } else {
-            extractAttachments(_call);
-
-            try {
-                return (ext.vamsas.JpredResult) _resp;
-            } catch (java.lang.Exception _exception) {
-                return (ext.vamsas.JpredResult) org.apache.axis.utils.JavaUtils.convert(_resp,
-                    ext.vamsas.JpredResult.class);
-            }
-        }
-    }
-}
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package ext.vamsas;
+
+public class JpredSoapBindingStub extends org.apache.axis.client.Stub
+        implements ext.vamsas.Jpred
+{
+  private java.util.Vector cachedSerClasses = new java.util.Vector();
+
+  private java.util.Vector cachedSerQNames = new java.util.Vector();
+
+  private java.util.Vector cachedSerFactories = new java.util.Vector();
+
+  private java.util.Vector cachedDeserFactories = new java.util.Vector();
+
+  static org.apache.axis.description.OperationDesc[] _operations;
+
+  static
+  {
+    _operations = new org.apache.axis.description.OperationDesc[4];
+    _initOperationDesc1();
+  }
+
+  private static void _initOperationDesc1()
+  {
+    org.apache.axis.description.OperationDesc oper;
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("predict");
+    oper.addParameter(new javax.xml.namespace.QName("", "seq"),
+            new javax.xml.namespace.QName("simple.objects.vamsas",
+                    "Sequence"), vamsas.objects.simple.Sequence.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "http://www.w3.org/2001/XMLSchema", "string"));
+    oper.setReturnClass(java.lang.String.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("", "predictReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[0] = oper;
+
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("predictOnMsa");
+    oper.addParameter(new javax.xml.namespace.QName("", "msf"),
+            new javax.xml.namespace.QName("http://simple.objects.vamsas",
+                    "Msfalignment"),
+            vamsas.objects.simple.Msfalignment.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "http://www.w3.org/2001/XMLSchema", "string"));
+    oper.setReturnClass(java.lang.String.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("",
+            "predictOnMsaReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[1] = oper;
+
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("getpredict");
+    oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "http://simple.objects.vamsas", "Secstructpred"));
+    oper.setReturnClass(vamsas.objects.simple.Secstructpred.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("",
+            "getpredictReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[2] = oper;
+
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("getresult");
+    oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "http://simple.objects.vamsas", "JpredResult"));
+    oper.setReturnClass(vamsas.objects.simple.JpredResult.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("", "getresultReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[3] = oper;
+
+  }
+
+  public JpredSoapBindingStub() throws org.apache.axis.AxisFault
+  {
+    this(null);
+  }
+
+  public JpredSoapBindingStub(java.net.URL endpointURL,
+          javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
+  {
+    this(service);
+    super.cachedEndpoint = endpointURL;
+  }
+
+  public JpredSoapBindingStub(javax.xml.rpc.Service service)
+          throws org.apache.axis.AxisFault
+  {
+    if (service == null)
+    {
+      super.service = new org.apache.axis.client.Service();
+    }
+    else
+    {
+      super.service = service;
+    }
+    java.lang.Class cls;
+    javax.xml.namespace.QName qName;
+    java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
+    java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+    /*
+     * java.lang.Class enumsf =
+     * org.apache.axis.encoding.ser.EnumSerializerFactory.class; java.lang.Class
+     * enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+     * java.lang.Class arraysf =
+     * org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+     * java.lang.Class arraydf =
+     * org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+     * java.lang.Class simplesf =
+     * org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+     * java.lang.Class simpledf =
+     * org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+     * java.lang.Class simplelistsf =
+     * org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
+     * java.lang.Class simplelistdf =
+     * org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
+     */
+    qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
+            "JpredResult");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.JpredResult.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Result.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
+            "Secstructpred");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Secstructpred.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
+            "Msfalignment");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Msfalignment.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "Sequence");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Sequence.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+  }
+
+  protected org.apache.axis.client.Call createCall()
+          throws java.rmi.RemoteException
+  {
+    try
+    {
+      org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
+              .createCall();
+      if (super.maintainSessionSet)
+      {
+        _call.setMaintainSession(super.maintainSession);
+      }
+      if (super.cachedUsername != null)
+      {
+        _call.setUsername(super.cachedUsername);
+      }
+      if (super.cachedPassword != null)
+      {
+        _call.setPassword(super.cachedPassword);
+      }
+      if (super.cachedEndpoint != null)
+      {
+        _call.setTargetEndpointAddress(super.cachedEndpoint);
+      }
+      if (super.cachedTimeout != null)
+      {
+        _call.setTimeout(super.cachedTimeout);
+      }
+      if (super.cachedPortName != null)
+      {
+        _call.setPortName(super.cachedPortName);
+      }
+      java.util.Enumeration keys = super.cachedProperties.keys();
+      while (keys.hasMoreElements())
+      {
+        java.lang.String key = (java.lang.String) keys.nextElement();
+        _call.setProperty(key, super.cachedProperties.get(key));
+      }
+      // All the type mapping information is registered
+      // when the first call is made.
+      // The type mapping information is actually registered in
+      // the TypeMappingRegistry of the service, which
+      // is the reason why registration is only needed for the first call.
+      synchronized (this)
+      {
+        if (firstCall())
+        {
+          // must set encoding style before registering serializers
+          _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+          _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
+          for (int i = 0; i < cachedSerFactories.size(); ++i)
+          {
+            java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
+            javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
+                    .get(i);
+            java.lang.Class sf = (java.lang.Class) cachedSerFactories
+                    .get(i);
+            java.lang.Class df = (java.lang.Class) cachedDeserFactories
+                    .get(i);
+            _call.registerTypeMapping(cls, qName, sf, df, false);
+          }
+        }
+      }
+      return _call;
+    } catch (java.lang.Throwable _t)
+    {
+      throw new org.apache.axis.AxisFault(
+              "Failure trying to get the Call object", _t);
+    }
+  }
+
+  public java.lang.String predict(vamsas.objects.simple.Sequence seq)
+          throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[0]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+            "predict"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { seq });
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+      try
+      {
+        return (java.lang.String) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
+                _resp, java.lang.String.class);
+      }
+    }
+  }
+
+  public java.lang.String predictOnMsa(
+          vamsas.objects.simple.Msfalignment msf)
+          throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[1]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+            "predictOnMsa"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { msf });
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+      try
+      {
+        return (java.lang.String) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
+                _resp, java.lang.String.class);
+      }
+    }
+  }
+
+  public vamsas.objects.simple.Secstructpred getpredict(
+          java.lang.String job_id) throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[2]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+            "getpredict"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { job_id });
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+      try
+      {
+        return (vamsas.objects.simple.Secstructpred) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (vamsas.objects.simple.Secstructpred) org.apache.axis.utils.JavaUtils
+                .convert(_resp, vamsas.objects.simple.Secstructpred.class);
+      }
+    }
+  }
+
+  public vamsas.objects.simple.JpredResult getresult(java.lang.String job_id)
+          throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[3]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+            "getresult"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { job_id });
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+      try
+      {
+        return (vamsas.objects.simple.JpredResult) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (vamsas.objects.simple.JpredResult) org.apache.axis.utils.JavaUtils
+                .convert(_resp, vamsas.objects.simple.JpredResult.class);
+      }
+    }
+  }
+
+}