X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fext%2Fvamsas%2FJpredSoapBindingStub.java;h=7c7f8e76d4330366b75943a638a297c037886a60;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=724a7d9683f9c003386f31a645b34475fcf475e2;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git

diff --git a/src/ext/vamsas/JpredSoapBindingStub.java b/src/ext/vamsas/JpredSoapBindingStub.java
index 724a7d9..7c7f8e7 100755
--- a/src/ext/vamsas/JpredSoapBindingStub.java
+++ b/src/ext/vamsas/JpredSoapBindingStub.java
@@ -1,19 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package ext.vamsas;
 
@@ -43,7 +46,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     oper.setName("predict");
     oper.addParameter(new javax.xml.namespace.QName("", "seq"),
             new javax.xml.namespace.QName("simple.objects.vamsas",
-                    "Sequence"), vamsas.objects.simple.Sequence.class,
+                    "Sequence"),
+            vamsas.objects.simple.Sequence.class,
             org.apache.axis.description.ParameterDesc.IN, false, false);
     oper.setReturnType(new javax.xml.namespace.QName(
             "http://www.w3.org/2001/XMLSchema", "string"));
@@ -63,8 +67,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     oper.setReturnType(new javax.xml.namespace.QName(
             "http://www.w3.org/2001/XMLSchema", "string"));
     oper.setReturnClass(java.lang.String.class);
-    oper.setReturnQName(new javax.xml.namespace.QName("",
-            "predictOnMsaReturn"));
+    oper.setReturnQName(
+            new javax.xml.namespace.QName("", "predictOnMsaReturn"));
     oper.setStyle(org.apache.axis.constants.Style.RPC);
     oper.setUse(org.apache.axis.constants.Use.ENCODED);
     _operations[1] = oper;
@@ -79,8 +83,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     oper.setReturnType(new javax.xml.namespace.QName(
             "http://simple.objects.vamsas", "Secstructpred"));
     oper.setReturnClass(vamsas.objects.simple.Secstructpred.class);
-    oper.setReturnQName(new javax.xml.namespace.QName("",
-            "getpredictReturn"));
+    oper.setReturnQName(
+            new javax.xml.namespace.QName("", "getpredictReturn"));
     oper.setStyle(org.apache.axis.constants.Style.RPC);
     oper.setUse(org.apache.axis.constants.Use.ENCODED);
     _operations[2] = oper;
@@ -95,7 +99,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     oper.setReturnType(new javax.xml.namespace.QName(
             "http://simple.objects.vamsas", "JpredResult"));
     oper.setReturnClass(vamsas.objects.simple.JpredResult.class);
-    oper.setReturnQName(new javax.xml.namespace.QName("", "getresultReturn"));
+    oper.setReturnQName(
+            new javax.xml.namespace.QName("", "getresultReturn"));
     oper.setStyle(org.apache.axis.constants.Style.RPC);
     oper.setUse(org.apache.axis.constants.Use.ENCODED);
     _operations[3] = oper;
@@ -154,7 +159,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     cachedSerFactories.add(beansf);
     cachedDeserFactories.add(beandf);
 
-    qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "Result");
     cachedSerQNames.add(qName);
     cls = vamsas.objects.simple.Result.class;
     cachedSerClasses.add(cls);
@@ -234,7 +240,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
         if (firstCall())
         {
           // must set encoding style before registering serializers
-          _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+          _call.setSOAPVersion(
+                  org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
           _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
           for (int i = 0; i < cachedSerFactories.size(); ++i)
           {
@@ -268,14 +275,14 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     _call.setOperation(_operations[0]);
     _call.setUseSOAPAction(true);
     _call.setSOAPActionURI("");
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
-            "predict"));
+    _call.setSOAPVersion(
+            org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(
+            new javax.xml.namespace.QName("vamsas", "predict"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { seq });
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { seq });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -289,8 +296,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
         return (java.lang.String) _resp;
       } catch (java.lang.Exception _exception)
       {
-        return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
-                _resp, java.lang.String.class);
+        return (java.lang.String) org.apache.axis.utils.JavaUtils
+                .convert(_resp, java.lang.String.class);
       }
     }
   }
@@ -307,14 +314,14 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     _call.setOperation(_operations[1]);
     _call.setUseSOAPAction(true);
     _call.setSOAPActionURI("");
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
-            "predictOnMsa"));
+    _call.setSOAPVersion(
+            org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(
+            new javax.xml.namespace.QName("vamsas", "predictOnMsa"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { msf });
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { msf });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -328,8 +335,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
         return (java.lang.String) _resp;
       } catch (java.lang.Exception _exception)
       {
-        return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
-                _resp, java.lang.String.class);
+        return (java.lang.String) org.apache.axis.utils.JavaUtils
+                .convert(_resp, java.lang.String.class);
       }
     }
   }
@@ -345,14 +352,16 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     _call.setOperation(_operations[2]);
     _call.setUseSOAPAction(true);
     _call.setSOAPActionURI("");
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
-            "getpredict"));
+    _call.setSOAPVersion(
+            org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(
+            new javax.xml.namespace.QName("vamsas", "getpredict"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { job_id });
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[]
+            { job_id });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -372,8 +381,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     }
   }
 
-  public vamsas.objects.simple.JpredResult getresult(java.lang.String job_id)
-          throws java.rmi.RemoteException
+  public vamsas.objects.simple.JpredResult getresult(
+          java.lang.String job_id) throws java.rmi.RemoteException
   {
     if (super.cachedEndpoint == null)
     {
@@ -383,14 +392,16 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     _call.setOperation(_operations[3]);
     _call.setUseSOAPAction(true);
     _call.setSOAPActionURI("");
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
-            "getresult"));
+    _call.setSOAPVersion(
+            org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(
+            new javax.xml.namespace.QName("vamsas", "getresult"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { job_id });
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[]
+            { job_id });
 
     if (_resp instanceof java.rmi.RemoteException)
     {