X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fext%2Fvamsas%2FJpredSoapBindingStub.java;h=834555144046acf8353f5f82467715029dfd39c1;hb=87256ba36fb105a1115067ffe2563412e9281d2d;hp=67f81c16a41d4bed24eae23d31bc1f7b23d21e88;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git

diff --git a/src/ext/vamsas/JpredSoapBindingStub.java b/src/ext/vamsas/JpredSoapBindingStub.java
old mode 100755
new mode 100644
index 67f81c1..8345551
--- a/src/ext/vamsas/JpredSoapBindingStub.java
+++ b/src/ext/vamsas/JpredSoapBindingStub.java
@@ -1,19 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package ext.vamsas;
 
@@ -28,7 +31,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
 
   private java.util.Vector cachedDeserFactories = new java.util.Vector();
 
-  static org.apache.axis.description.OperationDesc[] _operations;
+  private static org.apache.axis.description.OperationDesc[] _operations;
 
   static
   {
@@ -257,6 +260,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     }
   }
 
+  @Override
   public java.lang.String predict(vamsas.objects.simple.Sequence seq)
           throws java.rmi.RemoteException
   {
@@ -274,8 +278,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { seq });
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { seq });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -295,6 +298,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     }
   }
 
+  @Override
   public java.lang.String predictOnMsa(
           vamsas.objects.simple.Msfalignment msf)
           throws java.rmi.RemoteException
@@ -313,8 +317,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { msf });
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { msf });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -334,6 +337,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     }
   }
 
+  @Override
   public vamsas.objects.simple.Secstructpred getpredict(
           java.lang.String job_id) throws java.rmi.RemoteException
   {
@@ -351,8 +355,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { job_id });
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { job_id });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -372,6 +376,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
     }
   }
 
+  @Override
   public vamsas.objects.simple.JpredResult getresult(java.lang.String job_id)
           throws java.rmi.RemoteException
   {
@@ -389,8 +394,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { job_id });
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { job_id });
 
     if (_resp instanceof java.rmi.RemoteException)
     {