X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fext%2Fvamsas%2FJpredSoapBindingStub.java;h=a42bc490922076f44eae4551b6867f1cab6b3c3d;hb=1f3240f018a6442b1116c409a624fba042cc9efd;hp=d27a582da39a8ab49e9833c956e978e13f1a3d40;hpb=99c58ee0ae2a848f982552e53feaf6d5cb9925e5;p=jalview.git diff --git a/src/ext/vamsas/JpredSoapBindingStub.java b/src/ext/vamsas/JpredSoapBindingStub.java index d27a582..a42bc49 100755 --- a/src/ext/vamsas/JpredSoapBindingStub.java +++ b/src/ext/vamsas/JpredSoapBindingStub.java @@ -5,28 +5,9 @@ * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. */ -/* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ - package ext.vamsas; -public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements ext.vamsas.JPredWS { +public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements ext.vamsas.Jpred { private java.util.Vector cachedSerClasses = new java.util.Vector(); private java.util.Vector cachedSerQNames = new java.util.Vector(); private java.util.Vector cachedSerFactories = new java.util.Vector(); @@ -43,42 +24,42 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements org.apache.axis.description.OperationDesc oper; oper = new org.apache.axis.description.OperationDesc(); oper.setName("predict"); - oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence"), ext.vamsas.Sequence.class, org.apache.axis.description.ParameterDesc.IN, false, false); + oper.addParameter(new javax.xml.namespace.QName("", "seq"), new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence"), vamsas.objects.simple.Sequence.class, org.apache.axis.description.ParameterDesc.IN, false, false); oper.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string")); oper.setReturnClass(java.lang.String.class); - oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "predictReturn")); - oper.setStyle(org.apache.axis.constants.Style.WRAPPED); - oper.setUse(org.apache.axis.constants.Use.LITERAL); + oper.setReturnQName(new javax.xml.namespace.QName("", "predictReturn")); + oper.setStyle(org.apache.axis.constants.Style.RPC); + oper.setUse(org.apache.axis.constants.Use.ENCODED); _operations[0] = oper; oper = new org.apache.axis.description.OperationDesc(); oper.setName("predictOnMsa"); - oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://dataTypes.vamsas", "Msfalignment"), ext.vamsas.Msfalignment.class, org.apache.axis.description.ParameterDesc.IN, false, false); + oper.addParameter(new javax.xml.namespace.QName("", "msf"), new javax.xml.namespace.QName("http://simple.objects.vamsas", "Msfalignment"), vamsas.objects.simple.Msfalignment.class, org.apache.axis.description.ParameterDesc.IN, false, false); oper.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string")); oper.setReturnClass(java.lang.String.class); - oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "predictOnMsaReturn")); - oper.setStyle(org.apache.axis.constants.Style.WRAPPED); - oper.setUse(org.apache.axis.constants.Use.LITERAL); + oper.setReturnQName(new javax.xml.namespace.QName("", "predictOnMsaReturn")); + oper.setStyle(org.apache.axis.constants.Style.RPC); + oper.setUse(org.apache.axis.constants.Use.ENCODED); _operations[1] = oper; oper = new org.apache.axis.description.OperationDesc(); oper.setName("getpredict"); - oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false); - oper.setReturnType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "Secstructpred")); - oper.setReturnClass(ext.vamsas.Secstructpred.class); - oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "getpredictReturn")); - oper.setStyle(org.apache.axis.constants.Style.WRAPPED); - oper.setUse(org.apache.axis.constants.Use.LITERAL); + oper.addParameter(new javax.xml.namespace.QName("", "job_id"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false); + oper.setReturnType(new javax.xml.namespace.QName("http://simple.objects.vamsas", "Secstructpred")); + oper.setReturnClass(vamsas.objects.simple.Secstructpred.class); + oper.setReturnQName(new javax.xml.namespace.QName("", "getpredictReturn")); + oper.setStyle(org.apache.axis.constants.Style.RPC); + oper.setUse(org.apache.axis.constants.Use.ENCODED); _operations[2] = oper; oper = new org.apache.axis.description.OperationDesc(); oper.setName("getresult"); - oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false); - oper.setReturnType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "JpredResult")); - oper.setReturnClass(ext.vamsas.JpredResult.class); - oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "getresultReturn")); - oper.setStyle(org.apache.axis.constants.Style.WRAPPED); - oper.setUse(org.apache.axis.constants.Use.LITERAL); + oper.addParameter(new javax.xml.namespace.QName("", "job_id"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false); + oper.setReturnType(new javax.xml.namespace.QName("http://simple.objects.vamsas", "JpredResult")); + oper.setReturnClass(vamsas.objects.simple.JpredResult.class); + oper.setReturnQName(new javax.xml.namespace.QName("", "getresultReturn")); + oper.setStyle(org.apache.axis.constants.Style.RPC); + oper.setUse(org.apache.axis.constants.Use.ENCODED); _operations[3] = oper; } @@ -102,45 +83,45 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements javax.xml.namespace.QName qName; java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class; java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class; - java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class; + /*java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class; java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class; java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class; java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class; java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class; java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class; java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class; - java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class; - qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence"); + java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;*/ + qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "JpredResult"); cachedSerQNames.add(qName); - cls = ext.vamsas.Sequence.class; + cls = vamsas.objects.simple.JpredResult.class; cachedSerClasses.add(cls); cachedSerFactories.add(beansf); cachedDeserFactories.add(beandf); - qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Secstructpred"); + qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result"); cachedSerQNames.add(qName); - cls = ext.vamsas.Secstructpred.class; + cls = vamsas.objects.simple.Result.class; cachedSerClasses.add(cls); cachedSerFactories.add(beansf); cachedDeserFactories.add(beandf); - qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Msfalignment"); + qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "Secstructpred"); cachedSerQNames.add(qName); - cls = ext.vamsas.Msfalignment.class; + cls = vamsas.objects.simple.Secstructpred.class; cachedSerClasses.add(cls); cachedSerFactories.add(beansf); cachedDeserFactories.add(beandf); - qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "JpredResult"); + qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "Msfalignment"); cachedSerQNames.add(qName); - cls = ext.vamsas.JpredResult.class; + cls = vamsas.objects.simple.Msfalignment.class; cachedSerClasses.add(cls); cachedSerFactories.add(beansf); cachedDeserFactories.add(beandf); - qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Result"); + qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence"); cachedSerQNames.add(qName); - cls = ext.vamsas.Result.class; + cls = vamsas.objects.simple.Sequence.class; cachedSerClasses.add(cls); cachedSerFactories.add(beansf); cachedDeserFactories.add(beandf); @@ -182,7 +163,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements synchronized (this) { if (firstCall()) { // must set encoding style before registering serializers - _call.setEncodingStyle(null); + _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); + _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC); for (int i = 0; i < cachedSerFactories.size(); ++i) { java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i); javax.xml.namespace.QName qName = @@ -202,7 +184,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements } } - public java.lang.String predict(ext.vamsas.Sequence in0) throws java.rmi.RemoteException { + public java.lang.String predict(vamsas.objects.simple.Sequence seq) throws java.rmi.RemoteException { if (super.cachedEndpoint == null) { throw new org.apache.axis.NoEndPointException(); } @@ -210,15 +192,12 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements _call.setOperation(_operations[0]); _call.setUseSOAPAction(true); _call.setSOAPActionURI(""); - _call.setEncodingStyle(null); - _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE); - _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE); _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); _call.setOperationName(new javax.xml.namespace.QName("vamsas", "predict")); setRequestHeaders(_call); setAttachments(_call); - java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0}); + java.lang.Object _resp = _call.invoke(new java.lang.Object[] {seq}); if (_resp instanceof java.rmi.RemoteException) { throw (java.rmi.RemoteException)_resp; @@ -233,7 +212,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements } } - public java.lang.String predictOnMsa(ext.vamsas.Msfalignment in0) throws java.rmi.RemoteException { + public java.lang.String predictOnMsa(vamsas.objects.simple.Msfalignment msf) throws java.rmi.RemoteException { if (super.cachedEndpoint == null) { throw new org.apache.axis.NoEndPointException(); } @@ -241,15 +220,12 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements _call.setOperation(_operations[1]); _call.setUseSOAPAction(true); _call.setSOAPActionURI(""); - _call.setEncodingStyle(null); - _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE); - _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE); _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); _call.setOperationName(new javax.xml.namespace.QName("vamsas", "predictOnMsa")); setRequestHeaders(_call); setAttachments(_call); - java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0}); + java.lang.Object _resp = _call.invoke(new java.lang.Object[] {msf}); if (_resp instanceof java.rmi.RemoteException) { throw (java.rmi.RemoteException)_resp; @@ -264,7 +240,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements } } - public ext.vamsas.Secstructpred getpredict(java.lang.String in0) throws java.rmi.RemoteException { + public vamsas.objects.simple.Secstructpred getpredict(java.lang.String job_id) throws java.rmi.RemoteException { if (super.cachedEndpoint == null) { throw new org.apache.axis.NoEndPointException(); } @@ -272,15 +248,12 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements _call.setOperation(_operations[2]); _call.setUseSOAPAction(true); _call.setSOAPActionURI(""); - _call.setEncodingStyle(null); - _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE); - _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE); _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getpredict")); setRequestHeaders(_call); setAttachments(_call); - java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0}); + java.lang.Object _resp = _call.invoke(new java.lang.Object[] {job_id}); if (_resp instanceof java.rmi.RemoteException) { throw (java.rmi.RemoteException)_resp; @@ -288,14 +261,14 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements else { extractAttachments(_call); try { - return (ext.vamsas.Secstructpred) _resp; + return (vamsas.objects.simple.Secstructpred) _resp; } catch (java.lang.Exception _exception) { - return (ext.vamsas.Secstructpred) org.apache.axis.utils.JavaUtils.convert(_resp, ext.vamsas.Secstructpred.class); + return (vamsas.objects.simple.Secstructpred) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.Secstructpred.class); } } } - public ext.vamsas.JpredResult getresult(java.lang.String in0) throws java.rmi.RemoteException { + public vamsas.objects.simple.JpredResult getresult(java.lang.String job_id) throws java.rmi.RemoteException { if (super.cachedEndpoint == null) { throw new org.apache.axis.NoEndPointException(); } @@ -303,15 +276,12 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements _call.setOperation(_operations[3]); _call.setUseSOAPAction(true); _call.setSOAPActionURI(""); - _call.setEncodingStyle(null); - _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE); - _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE); _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getresult")); setRequestHeaders(_call); setAttachments(_call); - java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0}); + java.lang.Object _resp = _call.invoke(new java.lang.Object[] {job_id}); if (_resp instanceof java.rmi.RemoteException) { throw (java.rmi.RemoteException)_resp; @@ -319,9 +289,9 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements else { extractAttachments(_call); try { - return (ext.vamsas.JpredResult) _resp; + return (vamsas.objects.simple.JpredResult) _resp; } catch (java.lang.Exception _exception) { - return (ext.vamsas.JpredResult) org.apache.axis.utils.JavaUtils.convert(_resp, ext.vamsas.JpredResult.class); + return (vamsas.objects.simple.JpredResult) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.JpredResult.class); } } }