X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fext%2Fvamsas%2FMuscleWSSoapBindingStub.java;h=4ea8a26642857b00b0545391c546ea1e3bebfc83;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=de80f9e0c3fb4cf595c1007287d10568d9c244f2;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git

diff --git a/src/ext/vamsas/MuscleWSSoapBindingStub.java b/src/ext/vamsas/MuscleWSSoapBindingStub.java
index de80f9e..4ea8a26 100755
--- a/src/ext/vamsas/MuscleWSSoapBindingStub.java
+++ b/src/ext/vamsas/MuscleWSSoapBindingStub.java
@@ -1,470 +1,460 @@
-/**
- * MuscleWSSoapBindingStub.java
- *
- * This file was auto-generated from WSDL
- * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
- */
-
-/*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
- */
-package ext.vamsas;
-
-public class MuscleWSSoapBindingStub
-    extends org.apache.axis.client.Stub implements ext.vamsas.MuscleWS
-{
-  static org.apache.axis.description.OperationDesc[] _operations;
-
-  static
-  {
-    _operations = new org.apache.axis.description.OperationDesc[4];
-    _initOperationDesc1();
-  }
-
-  private java.util.Vector cachedSerClasses = new java.util.Vector();
-  private java.util.Vector cachedSerQNames = new java.util.Vector();
-  private java.util.Vector cachedSerFactories = new java.util.Vector();
-  private java.util.Vector cachedDeserFactories = new java.util.Vector();
-
-  public MuscleWSSoapBindingStub()
-      throws org.apache.axis.AxisFault
-  {
-    this(null);
-  }
-
-  public MuscleWSSoapBindingStub(java.net.URL endpointURL,
-                                 javax.xml.rpc.Service service)
-      throws org.apache.axis.AxisFault
-  {
-    this(service);
-    super.cachedEndpoint = endpointURL;
-  }
-
-  public MuscleWSSoapBindingStub(javax.xml.rpc.Service service)
-      throws org.apache.axis.AxisFault
-  {
-    if (service == null)
-    {
-      super.service = new org.apache.axis.client.Service();
-    }
-    else
-    {
-      super.service = service;
-    }
-
-    java.lang.Class cls;
-    javax.xml.namespace.QName qName;
-    java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
-    java.lang.Class beandf = org.apache.axis.encoding.ser.
-        BeanDeserializerFactory.class;
-    //java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
-    //java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
-    java.lang.Class arraysf = org.apache.axis.encoding.ser.
-        ArraySerializerFactory.class;
-    java.lang.Class arraydf = org.apache.axis.encoding.ser.
-        ArrayDeserializerFactory.class;
-    //java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
-    // java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
-    //java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
-    //java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
-    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
-                                          "Sequence");
-    cachedSerQNames.add(qName);
-    cls = vamsas.objects.simple.Sequence.class;
-    cachedSerClasses.add(cls);
-    cachedSerFactories.add(beansf);
-    cachedDeserFactories.add(beandf);
-
-    qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");
-    cachedSerQNames.add(qName);
-    cls = vamsas.objects.simple.Sequence[].class;
-    cachedSerClasses.add(cls);
-    cachedSerFactories.add(arraysf);
-    cachedDeserFactories.add(arraydf);
-
-    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
-                                          "MsaResult");
-    cachedSerQNames.add(qName);
-    cls = vamsas.objects.simple.MsaResult.class;
-    cachedSerClasses.add(cls);
-    cachedSerFactories.add(beansf);
-    cachedDeserFactories.add(beandf);
-
-    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
-                                          "SequenceSet");
-    cachedSerQNames.add(qName);
-    cls = vamsas.objects.simple.SequenceSet.class;
-    cachedSerClasses.add(cls);
-    cachedSerFactories.add(beansf);
-    cachedDeserFactories.add(beandf);
-
-    qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
-                                          "Object");
-    cachedSerQNames.add(qName);
-    cls = vamsas.objects.simple.Object.class;
-    cachedSerClasses.add(cls);
-    cachedSerFactories.add(beansf);
-    cachedDeserFactories.add(beandf);
-
-    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
-                                          "Alignment");
-    cachedSerQNames.add(qName);
-    cls = vamsas.objects.simple.Alignment.class;
-    cachedSerClasses.add(cls);
-    cachedSerFactories.add(beansf);
-    cachedDeserFactories.add(beandf);
-
-    qName = new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId");
-    cachedSerQNames.add(qName);
-    cls = vamsas.objects.simple.WsJobId.class;
-    cachedSerClasses.add(cls);
-    cachedSerFactories.add(beansf);
-    cachedDeserFactories.add(beandf);
-
-    qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
-    cachedSerQNames.add(qName);
-    cls = java.lang.String[].class;
-    cachedSerClasses.add(cls);
-    cachedSerFactories.add(arraysf);
-    cachedDeserFactories.add(arraydf);
-
-    qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
-    cachedSerQNames.add(qName);
-    cls = vamsas.objects.simple.Result.class;
-    cachedSerClasses.add(cls);
-    cachedSerFactories.add(beansf);
-    cachedDeserFactories.add(beandf);
-  }
-
-  private static void _initOperationDesc1()
-  {
-    org.apache.axis.description.OperationDesc oper;
-    oper = new org.apache.axis.description.OperationDesc();
-    oper.setName("align");
-    oper.addParameter(new javax.xml.namespace.QName("", "seqSet"),
-                      new javax.xml.namespace.QName("simple.objects.vamsas",
-        "SequenceSet"),
-                      vamsas.objects.simple.SequenceSet.class,
-                      org.apache.axis.description.ParameterDesc.IN, false, false);
-    oper.setReturnType(new javax.xml.namespace.QName(
-        "simple.objects.vamsas", "WsJobId"));
-    oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
-    oper.setReturnQName(new javax.xml.namespace.QName("", "alignReturn"));
-    oper.setStyle(org.apache.axis.constants.Style.RPC);
-    oper.setUse(org.apache.axis.constants.Use.ENCODED);
-    _operations[0] = oper;
-
-    oper = new org.apache.axis.description.OperationDesc();
-    oper.setName("getalign");
-    oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
-                      new javax.xml.namespace.QName(
-        "http://www.w3.org/2001/XMLSchema",
-        "string"), java.lang.String.class,
-                      org.apache.axis.description.ParameterDesc.IN, false, false);
-    oper.setReturnType(new javax.xml.namespace.QName(
-        "simple.objects.vamsas", "Alignment"));
-    oper.setReturnClass(vamsas.objects.simple.Alignment.class);
-    oper.setReturnQName(new javax.xml.namespace.QName("", "getalignReturn"));
-    oper.setStyle(org.apache.axis.constants.Style.RPC);
-    oper.setUse(org.apache.axis.constants.Use.ENCODED);
-    _operations[1] = oper;
-
-    oper = new org.apache.axis.description.OperationDesc();
-    oper.setName("getResult");
-    oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
-                      new javax.xml.namespace.QName(
-        "http://www.w3.org/2001/XMLSchema",
-        "string"), java.lang.String.class,
-                      org.apache.axis.description.ParameterDesc.IN, false, false);
-    oper.setReturnType(new javax.xml.namespace.QName(
-        "simple.objects.vamsas", "MsaResult"));
-    oper.setReturnClass(vamsas.objects.simple.MsaResult.class);
-    oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));
-    oper.setStyle(org.apache.axis.constants.Style.RPC);
-    oper.setUse(org.apache.axis.constants.Use.ENCODED);
-    _operations[2] = oper;
-
-    oper = new org.apache.axis.description.OperationDesc();
-    oper.setName("cancel");
-    oper.addParameter(new javax.xml.namespace.QName("", "jobId"),
-                      new javax.xml.namespace.QName(
-        "http://www.w3.org/2001/XMLSchema",
-        "string"), java.lang.String.class,
-                      org.apache.axis.description.ParameterDesc.IN, false, false);
-    oper.setReturnType(new javax.xml.namespace.QName(
-        "simple.objects.vamsas", "WsJobId"));
-    oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
-    oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
-    oper.setStyle(org.apache.axis.constants.Style.RPC);
-    oper.setUse(org.apache.axis.constants.Use.ENCODED);
-    _operations[3] = oper;
-  }
-
-  protected org.apache.axis.client.Call createCall()
-      throws java.rmi.RemoteException
-  {
-    try
-    {
-      org.apache.axis.client.Call _call = (org.apache.axis.client.Call)super.
-          service.createCall();
-
-      if (super.maintainSessionSet)
-      {
-        _call.setMaintainSession(super.maintainSession);
-      }
-
-      if (super.cachedUsername != null)
-      {
-        _call.setUsername(super.cachedUsername);
-      }
-
-      if (super.cachedPassword != null)
-      {
-        _call.setPassword(super.cachedPassword);
-      }
-
-      if (super.cachedEndpoint != null)
-      {
-        _call.setTargetEndpointAddress(super.cachedEndpoint);
-      }
-
-      if (super.cachedTimeout != null)
-      {
-        _call.setTimeout(super.cachedTimeout);
-      }
-
-      if (super.cachedPortName != null)
-      {
-        _call.setPortName(super.cachedPortName);
-      }
-
-      java.util.Enumeration keys = super.cachedProperties.keys();
-
-      while (keys.hasMoreElements())
-      {
-        java.lang.String key = (java.lang.String) keys.nextElement();
-        _call.setProperty(key, super.cachedProperties.get(key));
-      }
-
-      // All the type mapping information is registered
-      // when the first call is made.
-      // The type mapping information is actually registered in
-      // the TypeMappingRegistry of the service, which
-      // is the reason why registration is only needed for the first call.
-      synchronized (this)
-      {
-        if (firstCall())
-        {
-          // must set encoding style before registering serializers
-          _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.
-                               SOAP11_CONSTANTS);
-          _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
-
-          for (int i = 0; i < cachedSerFactories.size(); ++i)
-          {
-            java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
-            javax.xml.namespace.QName qName = (javax.xml.namespace.QName)
-                cachedSerQNames.get(i);
-            java.lang.Class sf = (java.lang.Class) cachedSerFactories.get(i);
-            java.lang.Class df = (java.lang.Class) cachedDeserFactories.get(i);
-            _call.registerTypeMapping(cls, qName, sf, df, false);
-          }
-        }
-      }
-
-      return _call;
-    }
-    catch (java.lang.Throwable _t)
-    {
-      throw new org.apache.axis.AxisFault(
-          "Failure trying to get the Call object",
-          _t);
-    }
-  }
-
-  public vamsas.objects.simple.WsJobId align(
-      vamsas.objects.simple.SequenceSet seqSet)
-      throws java.rmi.RemoteException
-  {
-    if (super.cachedEndpoint == null)
-    {
-      throw new org.apache.axis.NoEndPointException();
-    }
-
-    org.apache.axis.client.Call _call = createCall();
-    _call.setOperation(_operations[0]);
-    _call.setUseSOAPAction(true);
-    _call.setSOAPActionURI("");
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas", "align"));
-
-    setRequestHeaders(_call);
-    setAttachments(_call);
-
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-                                          {seqSet});
-
-    if (_resp instanceof java.rmi.RemoteException)
-    {
-      throw (java.rmi.RemoteException) _resp;
-    }
-    else
-    {
-      extractAttachments(_call);
-
-      try
-      {
-        return (vamsas.objects.simple.WsJobId) _resp;
-      }
-      catch (java.lang.Exception _exception)
-      {
-        return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.
-            convert(_resp,
-                    vamsas.objects.simple.WsJobId.class);
-      }
-    }
-  }
-
-  public vamsas.objects.simple.Alignment getalign(java.lang.String job_id)
-      throws java.rmi.RemoteException
-  {
-    if (super.cachedEndpoint == null)
-    {
-      throw new org.apache.axis.NoEndPointException();
-    }
-
-    org.apache.axis.client.Call _call = createCall();
-    _call.setOperation(_operations[1]);
-    _call.setUseSOAPAction(true);
-    _call.setSOAPActionURI("");
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
-        "getalign"));
-
-    setRequestHeaders(_call);
-    setAttachments(_call);
-
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-                                          {job_id});
-
-    if (_resp instanceof java.rmi.RemoteException)
-    {
-      throw (java.rmi.RemoteException) _resp;
-    }
-    else
-    {
-      extractAttachments(_call);
-
-      try
-      {
-        return (vamsas.objects.simple.Alignment) _resp;
-      }
-      catch (java.lang.Exception _exception)
-      {
-        return (vamsas.objects.simple.Alignment) org.apache.axis.utils.
-            JavaUtils.convert(_resp,
-                              vamsas.objects.simple.Alignment.class);
-      }
-    }
-  }
-
-  public vamsas.objects.simple.MsaResult getResult(java.lang.String job_id)
-      throws java.rmi.RemoteException
-  {
-    if (super.cachedEndpoint == null)
-    {
-      throw new org.apache.axis.NoEndPointException();
-    }
-
-    org.apache.axis.client.Call _call = createCall();
-    _call.setOperation(_operations[2]);
-    _call.setUseSOAPAction(true);
-    _call.setSOAPActionURI("");
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
-        "getResult"));
-
-    setRequestHeaders(_call);
-    setAttachments(_call);
-
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-                                          {job_id});
-
-    if (_resp instanceof java.rmi.RemoteException)
-    {
-      throw (java.rmi.RemoteException) _resp;
-    }
-    else
-    {
-      extractAttachments(_call);
-
-      try
-      {
-        return (vamsas.objects.simple.MsaResult) _resp;
-      }
-      catch (java.lang.Exception _exception)
-      {
-        return (vamsas.objects.simple.MsaResult) org.apache.axis.utils.
-            JavaUtils.convert(_resp,
-                              vamsas.objects.simple.MsaResult.class);
-      }
-    }
-  }
-
-  public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
-      throws java.rmi.RemoteException
-  {
-    if (super.cachedEndpoint == null)
-    {
-      throw new org.apache.axis.NoEndPointException();
-    }
-
-    org.apache.axis.client.Call _call = createCall();
-    _call.setOperation(_operations[3]);
-    _call.setUseSOAPAction(true);
-    _call.setSOAPActionURI("");
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));
-
-    setRequestHeaders(_call);
-    setAttachments(_call);
-
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-                                          {jobId});
-
-    if (_resp instanceof java.rmi.RemoteException)
-    {
-      throw (java.rmi.RemoteException) _resp;
-    }
-    else
-    {
-      extractAttachments(_call);
-
-      try
-      {
-        return (vamsas.objects.simple.WsJobId) _resp;
-      }
-      catch (java.lang.Exception _exception)
-      {
-        return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.
-            convert(_resp,
-                    vamsas.objects.simple.WsJobId.class);
-      }
-    }
-  }
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package ext.vamsas;
+
+public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
+        implements ext.vamsas.MuscleWS
+{
+  static org.apache.axis.description.OperationDesc[] _operations;
+
+  static
+  {
+    _operations = new org.apache.axis.description.OperationDesc[4];
+    _initOperationDesc1();
+  }
+
+  private java.util.Vector cachedSerClasses = new java.util.Vector();
+
+  private java.util.Vector cachedSerQNames = new java.util.Vector();
+
+  private java.util.Vector cachedSerFactories = new java.util.Vector();
+
+  private java.util.Vector cachedDeserFactories = new java.util.Vector();
+
+  public MuscleWSSoapBindingStub() throws org.apache.axis.AxisFault
+  {
+    this(null);
+  }
+
+  public MuscleWSSoapBindingStub(java.net.URL endpointURL,
+          javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
+  {
+    this(service);
+    super.cachedEndpoint = endpointURL;
+  }
+
+  public MuscleWSSoapBindingStub(javax.xml.rpc.Service service)
+          throws org.apache.axis.AxisFault
+  {
+    if (service == null)
+    {
+      super.service = new org.apache.axis.client.Service();
+    }
+    else
+    {
+      super.service = service;
+    }
+
+    java.lang.Class cls;
+    javax.xml.namespace.QName qName;
+    java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
+    java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+    // java.lang.Class enumsf =
+    // org.apache.axis.encoding.ser.EnumSerializerFactory.class;
+    // java.lang.Class enumdf =
+    // org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+    java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+    java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+    // java.lang.Class simplesf =
+    // org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+    // java.lang.Class simpledf =
+    // org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+    // java.lang.Class simplelistsf =
+    // org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
+    // java.lang.Class simplelistdf =
+    // org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "Sequence");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Sequence.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Sequence[].class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(arraysf);
+    cachedDeserFactories.add(arraydf);
+
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "MsaResult");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.MsaResult.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "SequenceSet");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.SequenceSet.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
+            "Object");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Object.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "Alignment");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Alignment.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "WsJobId");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.WsJobId.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
+    cachedSerQNames.add(qName);
+    cls = java.lang.String[].class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(arraysf);
+    cachedDeserFactories.add(arraydf);
+
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Result.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+  }
+
+  private static void _initOperationDesc1()
+  {
+    org.apache.axis.description.OperationDesc oper;
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("align");
+    oper.addParameter(new javax.xml.namespace.QName("", "seqSet"),
+            new javax.xml.namespace.QName("simple.objects.vamsas",
+                    "SequenceSet"),
+            vamsas.objects.simple.SequenceSet.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "simple.objects.vamsas", "WsJobId"));
+    oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("", "alignReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[0] = oper;
+
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("getalign");
+    oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "simple.objects.vamsas", "Alignment"));
+    oper.setReturnClass(vamsas.objects.simple.Alignment.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("", "getalignReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[1] = oper;
+
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("getResult");
+    oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "simple.objects.vamsas", "MsaResult"));
+    oper.setReturnClass(vamsas.objects.simple.MsaResult.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[2] = oper;
+
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("cancel");
+    oper.addParameter(new javax.xml.namespace.QName("", "jobId"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "simple.objects.vamsas", "WsJobId"));
+    oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[3] = oper;
+  }
+
+  protected org.apache.axis.client.Call createCall()
+          throws java.rmi.RemoteException
+  {
+    try
+    {
+      org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
+              .createCall();
+
+      if (super.maintainSessionSet)
+      {
+        _call.setMaintainSession(super.maintainSession);
+      }
+
+      if (super.cachedUsername != null)
+      {
+        _call.setUsername(super.cachedUsername);
+      }
+
+      if (super.cachedPassword != null)
+      {
+        _call.setPassword(super.cachedPassword);
+      }
+
+      if (super.cachedEndpoint != null)
+      {
+        _call.setTargetEndpointAddress(super.cachedEndpoint);
+      }
+
+      if (super.cachedTimeout != null)
+      {
+        _call.setTimeout(super.cachedTimeout);
+      }
+
+      if (super.cachedPortName != null)
+      {
+        _call.setPortName(super.cachedPortName);
+      }
+
+      java.util.Enumeration keys = super.cachedProperties.keys();
+
+      while (keys.hasMoreElements())
+      {
+        java.lang.String key = (java.lang.String) keys.nextElement();
+        _call.setProperty(key, super.cachedProperties.get(key));
+      }
+
+      // All the type mapping information is registered
+      // when the first call is made.
+      // The type mapping information is actually registered in
+      // the TypeMappingRegistry of the service, which
+      // is the reason why registration is only needed for the first call.
+      synchronized (this)
+      {
+        if (firstCall())
+        {
+          // must set encoding style before registering serializers
+          _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+          _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
+
+          for (int i = 0; i < cachedSerFactories.size(); ++i)
+          {
+            java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
+            javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
+                    .get(i);
+            java.lang.Class sf = (java.lang.Class) cachedSerFactories
+                    .get(i);
+            java.lang.Class df = (java.lang.Class) cachedDeserFactories
+                    .get(i);
+            _call.registerTypeMapping(cls, qName, sf, df, false);
+          }
+        }
+      }
+
+      return _call;
+    } catch (java.lang.Throwable _t)
+    {
+      throw new org.apache.axis.AxisFault(
+              "Failure trying to get the Call object", _t);
+    }
+  }
+
+  public vamsas.objects.simple.WsJobId align(
+          vamsas.objects.simple.SequenceSet seqSet)
+          throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[0]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas", "align"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { seqSet });
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+
+      try
+      {
+        return (vamsas.objects.simple.WsJobId) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
+                .convert(_resp, vamsas.objects.simple.WsJobId.class);
+      }
+    }
+  }
+
+  public vamsas.objects.simple.Alignment getalign(java.lang.String job_id)
+          throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[1]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+            "getalign"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { job_id });
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+
+      try
+      {
+        return (vamsas.objects.simple.Alignment) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (vamsas.objects.simple.Alignment) org.apache.axis.utils.JavaUtils
+                .convert(_resp, vamsas.objects.simple.Alignment.class);
+      }
+    }
+  }
+
+  public vamsas.objects.simple.MsaResult getResult(java.lang.String job_id)
+          throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[2]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+            "getResult"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { job_id });
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+
+      try
+      {
+        return (vamsas.objects.simple.MsaResult) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (vamsas.objects.simple.MsaResult) org.apache.axis.utils.JavaUtils
+                .convert(_resp, vamsas.objects.simple.MsaResult.class);
+      }
+    }
+  }
+
+  public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
+          throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[3]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { jobId });
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+
+      try
+      {
+        return (vamsas.objects.simple.WsJobId) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
+                .convert(_resp, vamsas.objects.simple.WsJobId.class);
+      }
+    }
+  }
+}