X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fext%2Fvamsas%2FMuscleWSSoapBindingStub.java;h=82728448e51ff706706078f89168dc8a8a183685;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=3e09d7b9ee886213713b76bfbff2d0103519d273;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git

diff --git a/src/ext/vamsas/MuscleWSSoapBindingStub.java b/src/ext/vamsas/MuscleWSSoapBindingStub.java
index 3e09d7b..8272844 100755
--- a/src/ext/vamsas/MuscleWSSoapBindingStub.java
+++ b/src/ext/vamsas/MuscleWSSoapBindingStub.java
@@ -1,19 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package ext.vamsas;
@@ -87,7 +89,8 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     cachedSerFactories.add(beansf);
     cachedDeserFactories.add(beandf);
 
-    qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");
+    qName = new javax.xml.namespace.QName("vamsas",
+            "ArrayOf_tns1_Sequence");
     cachedSerQNames.add(qName);
     cls = vamsas.objects.simple.Sequence[].class;
     cachedSerClasses.add(cls);
@@ -141,7 +144,8 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     cachedSerFactories.add(arraysf);
     cachedDeserFactories.add(arraydf);
 
-    qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "Result");
     cachedSerQNames.add(qName);
     cls = vamsas.objects.simple.Result.class;
     cachedSerClasses.add(cls);
@@ -177,7 +181,8 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     oper.setReturnType(new javax.xml.namespace.QName(
             "simple.objects.vamsas", "Alignment"));
     oper.setReturnClass(vamsas.objects.simple.Alignment.class);
-    oper.setReturnQName(new javax.xml.namespace.QName("", "getalignReturn"));
+    oper.setReturnQName(
+            new javax.xml.namespace.QName("", "getalignReturn"));
     oper.setStyle(org.apache.axis.constants.Style.RPC);
     oper.setUse(org.apache.axis.constants.Use.ENCODED);
     _operations[1] = oper;
@@ -192,7 +197,8 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     oper.setReturnType(new javax.xml.namespace.QName(
             "simple.objects.vamsas", "MsaResult"));
     oper.setReturnClass(vamsas.objects.simple.MsaResult.class);
-    oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));
+    oper.setReturnQName(
+            new javax.xml.namespace.QName("", "getResultReturn"));
     oper.setStyle(org.apache.axis.constants.Style.RPC);
     oper.setUse(org.apache.axis.constants.Use.ENCODED);
     _operations[2] = oper;
@@ -269,7 +275,8 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
         if (firstCall())
         {
           // must set encoding style before registering serializers
-          _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+          _call.setSOAPVersion(
+                  org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
           _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
 
           for (int i = 0; i < cachedSerFactories.size(); ++i)
@@ -307,14 +314,17 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     _call.setOperation(_operations[0]);
     _call.setUseSOAPAction(true);
     _call.setSOAPActionURI("");
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas", "align"));
+    _call.setSOAPVersion(
+            org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(
+            new javax.xml.namespace.QName("vamsas", "align"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
 
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { seqSet });
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[]
+            { seqSet });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -347,15 +357,17 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     _call.setOperation(_operations[1]);
     _call.setUseSOAPAction(true);
     _call.setSOAPActionURI("");
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
-            "getalign"));
+    _call.setSOAPVersion(
+            org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(
+            new javax.xml.namespace.QName("vamsas", "getalign"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
 
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { job_id });
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[]
+            { job_id });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -388,15 +400,17 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     _call.setOperation(_operations[2]);
     _call.setUseSOAPAction(true);
     _call.setSOAPActionURI("");
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
-            "getResult"));
+    _call.setSOAPVersion(
+            org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(
+            new javax.xml.namespace.QName("vamsas", "getResult"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
 
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { job_id });
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[]
+            { job_id });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -429,14 +443,15 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     _call.setOperation(_operations[3]);
     _call.setUseSOAPAction(true);
     _call.setSOAPActionURI("");
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));
+    _call.setSOAPVersion(
+            org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(
+            new javax.xml.namespace.QName("vamsas", "cancel"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
 
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { jobId });
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { jobId });
 
     if (_resp instanceof java.rmi.RemoteException)
     {