X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fext%2Fvamsas%2FMuscleWSSoapBindingStub.java;h=c901d830172cba18756d8f0b7c50654d12cdf4de;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=c8aa279568a90cafa92bad3ae946a1fdba202a49;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git
diff --git a/src/ext/vamsas/MuscleWSSoapBindingStub.java b/src/ext/vamsas/MuscleWSSoapBindingStub.java
index c8aa279..c901d83 100755
--- a/src/ext/vamsas/MuscleWSSoapBindingStub.java
+++ b/src/ext/vamsas/MuscleWSSoapBindingStub.java
@@ -1,37 +1,22 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
- */
-/*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
* You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package ext.vamsas;
@@ -194,9 +179,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
oper.setReturnType(new javax.xml.namespace.QName(
"simple.objects.vamsas", "Alignment"));
oper.setReturnClass(vamsas.objects.simple.Alignment.class);
- oper
- .setReturnQName(new javax.xml.namespace.QName("",
- "getalignReturn"));
+ oper.setReturnQName(new javax.xml.namespace.QName("", "getalignReturn"));
oper.setStyle(org.apache.axis.constants.Style.RPC);
oper.setUse(org.apache.axis.constants.Use.ENCODED);
_operations[1] = oper;
@@ -211,9 +194,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
oper.setReturnType(new javax.xml.namespace.QName(
"simple.objects.vamsas", "MsaResult"));
oper.setReturnClass(vamsas.objects.simple.MsaResult.class);
- oper
- .setReturnQName(new javax.xml.namespace.QName("",
- "getResultReturn"));
+ oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));
oper.setStyle(org.apache.axis.constants.Style.RPC);
oper.setUse(org.apache.axis.constants.Use.ENCODED);
_operations[2] = oper;
@@ -290,8 +271,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
if (firstCall())
{
// must set encoding style before registering serializers
- _call
- .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
_call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
for (int i = 0; i < cachedSerFactories.size(); ++i)
@@ -329,17 +309,14 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
_call.setOperation(_operations[0]);
_call.setUseSOAPAction(true);
_call.setSOAPActionURI("");
- _call
- .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call
- .setOperationName(new javax.xml.namespace.QName("vamsas",
- "align"));
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "align"));
setRequestHeaders(_call);
setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]
- { seqSet });
+ java.lang.Object _resp = _call
+ .invoke(new java.lang.Object[] { seqSet });
if (_resp instanceof java.rmi.RemoteException)
{
@@ -372,16 +349,15 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
_call.setOperation(_operations[1]);
_call.setUseSOAPAction(true);
_call.setSOAPActionURI("");
- _call
- .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
_call.setOperationName(new javax.xml.namespace.QName("vamsas",
"getalign"));
setRequestHeaders(_call);
setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]
- { job_id });
+ java.lang.Object _resp = _call
+ .invoke(new java.lang.Object[] { job_id });
if (_resp instanceof java.rmi.RemoteException)
{
@@ -414,16 +390,15 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
_call.setOperation(_operations[2]);
_call.setUseSOAPAction(true);
_call.setSOAPActionURI("");
- _call
- .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
_call.setOperationName(new javax.xml.namespace.QName("vamsas",
"getResult"));
setRequestHeaders(_call);
setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]
- { job_id });
+ java.lang.Object _resp = _call
+ .invoke(new java.lang.Object[] { job_id });
if (_resp instanceof java.rmi.RemoteException)
{
@@ -456,17 +431,13 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
_call.setOperation(_operations[3]);
_call.setUseSOAPAction(true);
_call.setSOAPActionURI("");
- _call
- .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call
- .setOperationName(new javax.xml.namespace.QName("vamsas",
- "cancel"));
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));
setRequestHeaders(_call);
setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]
- { jobId });
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] { jobId });
if (_resp instanceof java.rmi.RemoteException)
{