X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fext%2Fvamsas%2FMuscleWSSoapBindingStub.java;h=f14858938a2fdb3ea6188ec37a4062ece4356766;hb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;hp=958a4c296a36789851fb3c40bd9a93510b41483c;hpb=506d60f0e188723ddc91c26824b41ac7034df3fe;p=jalview.git diff --git a/src/ext/vamsas/MuscleWSSoapBindingStub.java b/src/ext/vamsas/MuscleWSSoapBindingStub.java index 958a4c2..f148589 100755 --- a/src/ext/vamsas/MuscleWSSoapBindingStub.java +++ b/src/ext/vamsas/MuscleWSSoapBindingStub.java @@ -1,38 +1,19 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4) - * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. + * This file is part of Jalview. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. * - * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA - */ -/* - * Jalview - A Sequence Alignment Editor and Viewer - * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . */ package ext.vamsas; @@ -195,9 +176,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub oper.setReturnType(new javax.xml.namespace.QName( "simple.objects.vamsas", "Alignment")); oper.setReturnClass(vamsas.objects.simple.Alignment.class); - oper - .setReturnQName(new javax.xml.namespace.QName("", - "getalignReturn")); + oper.setReturnQName(new javax.xml.namespace.QName("", "getalignReturn")); oper.setStyle(org.apache.axis.constants.Style.RPC); oper.setUse(org.apache.axis.constants.Use.ENCODED); _operations[1] = oper; @@ -212,9 +191,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub oper.setReturnType(new javax.xml.namespace.QName( "simple.objects.vamsas", "MsaResult")); oper.setReturnClass(vamsas.objects.simple.MsaResult.class); - oper - .setReturnQName(new javax.xml.namespace.QName("", - "getResultReturn")); + oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn")); oper.setStyle(org.apache.axis.constants.Style.RPC); oper.setUse(org.apache.axis.constants.Use.ENCODED); _operations[2] = oper; @@ -291,8 +268,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub if (firstCall()) { // must set encoding style before registering serializers - _call - .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); + _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC); for (int i = 0; i < cachedSerFactories.size(); ++i) @@ -330,11 +306,8 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub _call.setOperation(_operations[0]); _call.setUseSOAPAction(true); _call.setSOAPActionURI(""); - _call - .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); - _call - .setOperationName(new javax.xml.namespace.QName("vamsas", - "align")); + _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); + _call.setOperationName(new javax.xml.namespace.QName("vamsas", "align")); setRequestHeaders(_call); setAttachments(_call); @@ -373,8 +346,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub _call.setOperation(_operations[1]); _call.setUseSOAPAction(true); _call.setSOAPActionURI(""); - _call - .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); + _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getalign")); @@ -415,8 +387,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub _call.setOperation(_operations[2]); _call.setUseSOAPAction(true); _call.setSOAPActionURI(""); - _call - .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); + _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getResult")); @@ -457,11 +428,8 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub _call.setOperation(_operations[3]); _call.setUseSOAPAction(true); _call.setSOAPActionURI(""); - _call - .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); - _call - .setOperationName(new javax.xml.namespace.QName("vamsas", - "cancel")); + _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); + _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel")); setRequestHeaders(_call); setAttachments(_call);