X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fext%2Fvamsas%2FSeqSearchServiceSoapBindingStub.java;h=57ce6185e7a934056fe6f8c0d1e03d1afb110c10;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=614a85f9047dd99caab4e61988baf0e3035868fe;hpb=08bde8d252a69d4d6a3b2497f759bd5d6f154a3f;p=jalview.git

diff --git a/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java b/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
index 614a85f..57ce618 100644
--- a/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
+++ b/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
@@ -1,366 +1,489 @@
-/**
- * ScanPSServiceSoapBindingStub.java
- *
- * This file was auto-generated from WSDL
- * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
- */
-
-package ext.vamsas;
-
-public class SeqSearchServiceSoapBindingStub extends org.apache.axis.client.Stub implements ext.vamsas.SeqSearchI {
-    private java.util.Vector cachedSerClasses = new java.util.Vector();
-    private java.util.Vector cachedSerQNames = new java.util.Vector();
-    private java.util.Vector cachedSerFactories = new java.util.Vector();
-    private java.util.Vector cachedDeserFactories = new java.util.Vector();
-
-    static org.apache.axis.description.OperationDesc [] _operations;
-
-    static {
-        _operations = new org.apache.axis.description.OperationDesc[5];
-        _initOperationDesc1();
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package ext.vamsas;
+
+public class SeqSearchServiceSoapBindingStub extends
+        org.apache.axis.client.Stub implements ext.vamsas.SeqSearchI
+{
+  private java.util.Vector cachedSerClasses = new java.util.Vector();
+
+  private java.util.Vector cachedSerQNames = new java.util.Vector();
+
+  private java.util.Vector cachedSerFactories = new java.util.Vector();
+
+  private java.util.Vector cachedDeserFactories = new java.util.Vector();
+
+  static org.apache.axis.description.OperationDesc[] _operations;
+
+  static
+  {
+    _operations = new org.apache.axis.description.OperationDesc[5];
+    _initOperationDesc1();
+  }
+
+  private static void _initOperationDesc1()
+  {
+    org.apache.axis.description.OperationDesc oper;
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("getDatabase");
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "http://www.w3.org/2001/XMLSchema", "string"));
+    oper.setReturnClass(java.lang.String.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("",
+            "getDatabaseReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[0] = oper;
+
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("getResult");
+    oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "simple.objects.vamsas", "SeqSearchResult"));
+    oper.setReturnClass(vamsas.objects.simple.SeqSearchResult.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[1] = oper;
+
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("psearch");
+    oper.addParameter(new javax.xml.namespace.QName("", "al"),
+            new javax.xml.namespace.QName("simple.objects.vamsas",
+                    "Alignment"), vamsas.objects.simple.Alignment.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.addParameter(new javax.xml.namespace.QName("", "database"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "simple.objects.vamsas", "WsJobId"));
+    oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("", "psearchReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[2] = oper;
+
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("search");
+    oper.addParameter(new javax.xml.namespace.QName("", "s"),
+            new javax.xml.namespace.QName("simple.objects.vamsas",
+                    "Sequence"), vamsas.objects.simple.Sequence.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.addParameter(new javax.xml.namespace.QName("", "database"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "simple.objects.vamsas", "WsJobId"));
+    oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("", "searchReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[3] = oper;
+
+    oper = new org.apache.axis.description.OperationDesc();
+    oper.setName("cancel");
+    oper.addParameter(new javax.xml.namespace.QName("", "jobId"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.setReturnType(new javax.xml.namespace.QName(
+            "simple.objects.vamsas", "WsJobId"));
+    oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
+    oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
+    oper.setStyle(org.apache.axis.constants.Style.RPC);
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);
+    _operations[4] = oper;
+
+  }
+
+  public SeqSearchServiceSoapBindingStub() throws org.apache.axis.AxisFault
+  {
+    this(null);
+  }
+
+  public SeqSearchServiceSoapBindingStub(java.net.URL endpointURL,
+          javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
+  {
+    this(service);
+    super.cachedEndpoint = endpointURL;
+  }
+
+  public SeqSearchServiceSoapBindingStub(javax.xml.rpc.Service service)
+          throws org.apache.axis.AxisFault
+  {
+    if (service == null)
+    {
+      super.service = new org.apache.axis.client.Service();
     }
-
-    private static void _initOperationDesc1(){
-        org.apache.axis.description.OperationDesc oper;
-        oper = new org.apache.axis.description.OperationDesc();
-        oper.setName("getDatabase");
-        oper.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
-        oper.setReturnClass(java.lang.String.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("", "getDatabaseReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.RPC);
-        oper.setUse(org.apache.axis.constants.Use.ENCODED);
-        _operations[0] = oper;
-
-        oper = new org.apache.axis.description.OperationDesc();
-        oper.setName("getResult");
-        oper.addParameter(new javax.xml.namespace.QName("", "job_id"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
-        oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "SeqSearchResult"));
-        oper.setReturnClass(vamsas.objects.simple.SeqSearchResult.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.RPC);
-        oper.setUse(org.apache.axis.constants.Use.ENCODED);
-        _operations[1] = oper;
-
-        oper = new org.apache.axis.description.OperationDesc();
-        oper.setName("psearch");
-        oper.addParameter(new javax.xml.namespace.QName("", "al"), new javax.xml.namespace.QName("simple.objects.vamsas", "Alignment"), vamsas.objects.simple.Alignment.class, org.apache.axis.description.ParameterDesc.IN, false, false);
-        oper.addParameter(new javax.xml.namespace.QName("", "database"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
-        oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId"));
-        oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("", "psearchReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.RPC);
-        oper.setUse(org.apache.axis.constants.Use.ENCODED);
-        _operations[2] = oper;
-
-        oper = new org.apache.axis.description.OperationDesc();
-        oper.setName("search");
-        oper.addParameter(new javax.xml.namespace.QName("", "s"), new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence"), vamsas.objects.simple.Sequence.class, org.apache.axis.description.ParameterDesc.IN, false, false);
-        oper.addParameter(new javax.xml.namespace.QName("", "database"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
-        oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId"));
-        oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("", "searchReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.RPC);
-        oper.setUse(org.apache.axis.constants.Use.ENCODED);
-        _operations[3] = oper;
-
-        oper = new org.apache.axis.description.OperationDesc();
-        oper.setName("cancel");
-        oper.addParameter(new javax.xml.namespace.QName("", "jobId"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
-        oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId"));
-        oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.RPC);
-        oper.setUse(org.apache.axis.constants.Use.ENCODED);
-        _operations[4] = oper;
-
-    }
-
-    public SeqSearchServiceSoapBindingStub() throws org.apache.axis.AxisFault {
-         this(null);
-    }
-
-    public SeqSearchServiceSoapBindingStub(java.net.URL endpointURL, javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
-         this(service);
-         super.cachedEndpoint = endpointURL;
-    }
-
-    public SeqSearchServiceSoapBindingStub(javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
-        if (service == null) {
-            super.service = new org.apache.axis.client.Service();
-        } else {
-            super.service = service;
-        }
-            java.lang.Class cls;
-            javax.xml.namespace.QName qName;
-            java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
-            java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
-            java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
-            java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
-            java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
-            java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
-            java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
-            java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
-            java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
-            java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
-            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
-            cachedSerQNames.add(qName);
-            cls = vamsas.objects.simple.Result.class;
-            cachedSerClasses.add(cls);
-            cachedSerFactories.add(beansf);
-            cachedDeserFactories.add(beandf);
-
-            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId");
-            cachedSerQNames.add(qName);
-            cls = vamsas.objects.simple.WsJobId.class;
-            cachedSerClasses.add(cls);
-            cachedSerFactories.add(beansf);
-            cachedDeserFactories.add(beandf);
-
-            qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "Object");
-            cachedSerQNames.add(qName);
-            cls = vamsas.objects.simple.Object.class;
-            cachedSerClasses.add(cls);
-            cachedSerFactories.add(beansf);
-            cachedDeserFactories.add(beandf);
-
-            qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
-            cachedSerQNames.add(qName);
-            cls = java.lang.String[].class;
-            cachedSerClasses.add(cls);
-            cachedSerFactories.add(arraysf);
-            cachedDeserFactories.add(arraydf);
-
-            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Alignment");
-            cachedSerQNames.add(qName);
-            cls = vamsas.objects.simple.Alignment.class;
-            cachedSerClasses.add(cls);
-            cachedSerFactories.add(beansf);
-            cachedDeserFactories.add(beandf);
-
-            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence");
-            cachedSerQNames.add(qName);
-            cls = vamsas.objects.simple.Sequence.class;
-            cachedSerClasses.add(cls);
-            cachedSerFactories.add(beansf);
-            cachedDeserFactories.add(beandf);
-
-            qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");
-            cachedSerQNames.add(qName);
-            cls = vamsas.objects.simple.Sequence[].class;
-            cachedSerClasses.add(cls);
-            cachedSerFactories.add(arraysf);
-            cachedDeserFactories.add(arraydf);
-
-            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "SeqSearchResult");
-            cachedSerQNames.add(qName);
-            cls = vamsas.objects.simple.SeqSearchResult.class;
-            cachedSerClasses.add(cls);
-            cachedSerFactories.add(beansf);
-            cachedDeserFactories.add(beandf);
-
-            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "SequenceSet");
-            cachedSerQNames.add(qName);
-            cls = vamsas.objects.simple.SequenceSet.class;
-            cachedSerClasses.add(cls);
-            cachedSerFactories.add(beansf);
-            cachedDeserFactories.add(beandf);
-
-    }
-
-    protected org.apache.axis.client.Call createCall() throws java.rmi.RemoteException {
-        try {
-            org.apache.axis.client.Call _call =
-                    (org.apache.axis.client.Call) super.service.createCall();
-            if (super.maintainSessionSet) {
-                _call.setMaintainSession(super.maintainSession);
-            }
-            if (super.cachedUsername != null) {
-                _call.setUsername(super.cachedUsername);
-            }
-            if (super.cachedPassword != null) {
-                _call.setPassword(super.cachedPassword);
-            }
-            if (super.cachedEndpoint != null) {
-                _call.setTargetEndpointAddress(super.cachedEndpoint);
-            }
-            if (super.cachedTimeout != null) {
-                _call.setTimeout(super.cachedTimeout);
-            }
-            if (super.cachedPortName != null) {
-                _call.setPortName(super.cachedPortName);
-            }
-            java.util.Enumeration keys = super.cachedProperties.keys();
-            while (keys.hasMoreElements()) {
-                java.lang.String key = (java.lang.String) keys.nextElement();
-                _call.setProperty(key, super.cachedProperties.get(key));
-            }
-            // All the type mapping information is registered
-            // when the first call is made.
-            // The type mapping information is actually registered in
-            // the TypeMappingRegistry of the service, which
-            // is the reason why registration is only needed for the first call.
-            synchronized (this) {
-                if (firstCall()) {
-                    // must set encoding style before registering serializers
-                    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-                    _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
-                    for (int i = 0; i < cachedSerFactories.size(); ++i) {
-                        java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
-                        javax.xml.namespace.QName qName =
-                                (javax.xml.namespace.QName) cachedSerQNames.get(i);
-                        java.lang.Class sf = (java.lang.Class)
-                                 cachedSerFactories.get(i);
-                        java.lang.Class df = (java.lang.Class)
-                                 cachedDeserFactories.get(i);
-                        _call.registerTypeMapping(cls, qName, sf, df, false);
-                    }
-                }
-            }
-            return _call;
-        }
-        catch (java.lang.Throwable _t) {
-            throw new org.apache.axis.AxisFault("Failure trying to get the Call object", _t);
-        }
-    }
-
-    public java.lang.String getDatabase() throws java.rmi.RemoteException {
-        if (super.cachedEndpoint == null) {
-            throw new org.apache.axis.NoEndPointException();
-        }
-        org.apache.axis.client.Call _call = createCall();
-        _call.setOperation(_operations[0]);
-        _call.setUseSOAPAction(true);
-        _call.setSOAPActionURI("");
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getDatabase"));
-
-        setRequestHeaders(_call);
-        setAttachments(_call);
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {});
-
-        if (_resp instanceof java.rmi.RemoteException) {
-            throw (java.rmi.RemoteException)_resp;
-        }
-        else {
-            extractAttachments(_call);
-            try {
-                return (java.lang.String) _resp;
-            } catch (java.lang.Exception _exception) {
-                return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class);
-            }
-        }
-    }
-
-    public vamsas.objects.simple.SeqSearchResult getResult(java.lang.String job_id) throws java.rmi.RemoteException {
-        if (super.cachedEndpoint == null) {
-            throw new org.apache.axis.NoEndPointException();
-        }
-        org.apache.axis.client.Call _call = createCall();
-        _call.setOperation(_operations[1]);
-        _call.setUseSOAPAction(true);
-        _call.setSOAPActionURI("");
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getResult"));
-
-        setRequestHeaders(_call);
-        setAttachments(_call);
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {job_id});
-
-        if (_resp instanceof java.rmi.RemoteException) {
-            throw (java.rmi.RemoteException)_resp;
-        }
-        else {
-            extractAttachments(_call);
-            try {
-                return (vamsas.objects.simple.SeqSearchResult) _resp;
-            } catch (java.lang.Exception _exception) {
-                return (vamsas.objects.simple.SeqSearchResult) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.SeqSearchResult.class);
-            }
-        }
-    }
-
-    public vamsas.objects.simple.WsJobId psearch(vamsas.objects.simple.Alignment al, java.lang.String database) throws java.rmi.RemoteException {
-        if (super.cachedEndpoint == null) {
-            throw new org.apache.axis.NoEndPointException();
-        }
-        org.apache.axis.client.Call _call = createCall();
-        _call.setOperation(_operations[2]);
-        _call.setUseSOAPAction(true);
-        _call.setSOAPActionURI("");
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas", "psearch"));
-
-        setRequestHeaders(_call);
-        setAttachments(_call);
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {al, database});
-
-        if (_resp instanceof java.rmi.RemoteException) {
-            throw (java.rmi.RemoteException)_resp;
-        }
-        else {
-            extractAttachments(_call);
-            try {
-                return (vamsas.objects.simple.WsJobId) _resp;
-            } catch (java.lang.Exception _exception) {
-                return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.WsJobId.class);
-            }
-        }
-    }
-
-    public vamsas.objects.simple.WsJobId search(vamsas.objects.simple.Sequence s, java.lang.String database) throws java.rmi.RemoteException {
-        if (super.cachedEndpoint == null) {
-            throw new org.apache.axis.NoEndPointException();
-        }
-        org.apache.axis.client.Call _call = createCall();
-        _call.setOperation(_operations[3]);
-        _call.setUseSOAPAction(true);
-        _call.setSOAPActionURI("");
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas", "search"));
-
-        setRequestHeaders(_call);
-        setAttachments(_call);
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {s, database});
-
-        if (_resp instanceof java.rmi.RemoteException) {
-            throw (java.rmi.RemoteException)_resp;
-        }
-        else {
-            extractAttachments(_call);
-            try {
-                return (vamsas.objects.simple.WsJobId) _resp;
-            } catch (java.lang.Exception _exception) {
-                return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.WsJobId.class);
-            }
-        }
-    }
-
-    public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId) throws java.rmi.RemoteException {
-        if (super.cachedEndpoint == null) {
-            throw new org.apache.axis.NoEndPointException();
-        }
-        org.apache.axis.client.Call _call = createCall();
-        _call.setOperation(_operations[4]);
-        _call.setUseSOAPAction(true);
-        _call.setSOAPActionURI("");
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));
-
-        setRequestHeaders(_call);
-        setAttachments(_call);
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobId});
-
-        if (_resp instanceof java.rmi.RemoteException) {
-            throw (java.rmi.RemoteException)_resp;
-        }
-        else {
-            extractAttachments(_call);
-            try {
-                return (vamsas.objects.simple.WsJobId) _resp;
-            } catch (java.lang.Exception _exception) {
-                return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.WsJobId.class);
-            }
-        }
-    }
-
-}
+    else
+    {
+      super.service = service;
+    }
+    java.lang.Class cls;
+    javax.xml.namespace.QName qName;
+    java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
+    java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+    java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
+    java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+    java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+    java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+    java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+    java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+    java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
+    java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Result.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "WsJobId");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.WsJobId.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
+            "Object");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Object.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
+    cachedSerQNames.add(qName);
+    cls = java.lang.String[].class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(arraysf);
+    cachedDeserFactories.add(arraydf);
+
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "Alignment");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Alignment.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "Sequence");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Sequence.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.Sequence[].class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(arraysf);
+    cachedDeserFactories.add(arraydf);
+
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "SeqSearchResult");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.SeqSearchResult.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "SequenceSet");
+    cachedSerQNames.add(qName);
+    cls = vamsas.objects.simple.SequenceSet.class;
+    cachedSerClasses.add(cls);
+    cachedSerFactories.add(beansf);
+    cachedDeserFactories.add(beandf);
+
+  }
+
+  protected org.apache.axis.client.Call createCall()
+          throws java.rmi.RemoteException
+  {
+    try
+    {
+      org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
+              .createCall();
+      if (super.maintainSessionSet)
+      {
+        _call.setMaintainSession(super.maintainSession);
+      }
+      if (super.cachedUsername != null)
+      {
+        _call.setUsername(super.cachedUsername);
+      }
+      if (super.cachedPassword != null)
+      {
+        _call.setPassword(super.cachedPassword);
+      }
+      if (super.cachedEndpoint != null)
+      {
+        _call.setTargetEndpointAddress(super.cachedEndpoint);
+      }
+      if (super.cachedTimeout != null)
+      {
+        _call.setTimeout(super.cachedTimeout);
+      }
+      if (super.cachedPortName != null)
+      {
+        _call.setPortName(super.cachedPortName);
+      }
+      java.util.Enumeration keys = super.cachedProperties.keys();
+      while (keys.hasMoreElements())
+      {
+        java.lang.String key = (java.lang.String) keys.nextElement();
+        _call.setProperty(key, super.cachedProperties.get(key));
+      }
+      // All the type mapping information is registered
+      // when the first call is made.
+      // The type mapping information is actually registered in
+      // the TypeMappingRegistry of the service, which
+      // is the reason why registration is only needed for the first call.
+      synchronized (this)
+      {
+        if (firstCall())
+        {
+          // must set encoding style before registering serializers
+          _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+          _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
+          for (int i = 0; i < cachedSerFactories.size(); ++i)
+          {
+            java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
+            javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
+                    .get(i);
+            java.lang.Class sf = (java.lang.Class) cachedSerFactories
+                    .get(i);
+            java.lang.Class df = (java.lang.Class) cachedDeserFactories
+                    .get(i);
+            _call.registerTypeMapping(cls, qName, sf, df, false);
+          }
+        }
+      }
+      return _call;
+    } catch (java.lang.Throwable _t)
+    {
+      throw new org.apache.axis.AxisFault(
+              "Failure trying to get the Call object", _t);
+    }
+  }
+
+  public java.lang.String getDatabase() throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[0]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+            "getDatabase"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] {});
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+      try
+      {
+        return (java.lang.String) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
+                _resp, java.lang.String.class);
+      }
+    }
+  }
+
+  public vamsas.objects.simple.SeqSearchResult getResult(
+          java.lang.String job_id) throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[1]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+            "getResult"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { job_id });
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+      try
+      {
+        return (vamsas.objects.simple.SeqSearchResult) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (vamsas.objects.simple.SeqSearchResult) org.apache.axis.utils.JavaUtils
+                .convert(_resp, vamsas.objects.simple.SeqSearchResult.class);
+      }
+    }
+  }
+
+  public vamsas.objects.simple.WsJobId psearch(
+          vamsas.objects.simple.Alignment al, java.lang.String database)
+          throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[2]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+            "psearch"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { al,
+        database });
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+      try
+      {
+        return (vamsas.objects.simple.WsJobId) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
+                .convert(_resp, vamsas.objects.simple.WsJobId.class);
+      }
+    }
+  }
+
+  public vamsas.objects.simple.WsJobId search(
+          vamsas.objects.simple.Sequence s, java.lang.String database)
+          throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[3]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas", "search"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { s,
+        database });
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+      try
+      {
+        return (vamsas.objects.simple.WsJobId) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
+                .convert(_resp, vamsas.objects.simple.WsJobId.class);
+      }
+    }
+  }
+
+  public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
+          throws java.rmi.RemoteException
+  {
+    if (super.cachedEndpoint == null)
+    {
+      throw new org.apache.axis.NoEndPointException();
+    }
+    org.apache.axis.client.Call _call = createCall();
+    _call.setOperation(_operations[4]);
+    _call.setUseSOAPAction(true);
+    _call.setSOAPActionURI("");
+    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));
+
+    setRequestHeaders(_call);
+    setAttachments(_call);
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { jobId });
+
+    if (_resp instanceof java.rmi.RemoteException)
+    {
+      throw (java.rmi.RemoteException) _resp;
+    }
+    else
+    {
+      extractAttachments(_call);
+      try
+      {
+        return (vamsas.objects.simple.WsJobId) _resp;
+      } catch (java.lang.Exception _exception)
+      {
+        return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
+                .convert(_resp, vamsas.objects.simple.WsJobId.class);
+      }
+    }
+  }
+
+}