X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAAFrequency.java;h=75a777fd7af1e4e285d0bdabc8d5fa08e0817a77;hb=64e9fe452576749d247b6dca0fc231237c40f743;hp=ca4e71cef32a8ec42b69a10afbbff88460622fa4;hpb=2f4f1d8fb6878271b64f327bc58c895f458137af;p=jalview.git

diff --git a/src/jalview/analysis/AAFrequency.java b/src/jalview/analysis/AAFrequency.java
index ca4e71c..75a777f 100755
--- a/src/jalview/analysis/AAFrequency.java
+++ b/src/jalview/analysis/AAFrequency.java
@@ -183,9 +183,11 @@ public class AAFrequency
       residueHash.put(PID_GAPS, new Float(percentage));
 
       if (nongap>0) {
+        // calculate for non-gapped too
         percentage = ((float) maxCount * 100) / nongap;
-        residueHash.put(PID_NOGAPS, new Float(percentage));
       }
+      residueHash.put(PID_NOGAPS, new Float(percentage));
+      
       result[i] = residueHash;
     }
   }