X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAAFrequency.java;h=d028ade26d7681f801107a7c77485e287d5f3c0e;hb=6fa2247c40e66f9d90ebb9967da5ef6cd96edfa0;hp=08a3f52c87492c3cc86d9424edc9ffb674fdc7ba;hpb=416f6e172aa77e3b0f2c2bd2b7a5655a6194d936;p=jalview.git

diff --git a/src/jalview/analysis/AAFrequency.java b/src/jalview/analysis/AAFrequency.java
index 08a3f52..d028ade 100755
--- a/src/jalview/analysis/AAFrequency.java
+++ b/src/jalview/analysis/AAFrequency.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -14,6 +14,7 @@
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.analysis;
 
@@ -182,9 +183,11 @@ public class AAFrequency
       residueHash.put(PID_GAPS, new Float(percentage));
 
       if (nongap>0) {
+        // calculate for non-gapped too
         percentage = ((float) maxCount * 100) / nongap;
-        residueHash.put(PID_NOGAPS, new Float(percentage));
       }
+      residueHash.put(PID_NOGAPS, new Float(percentage));
+      
       result[i] = residueHash;
     }
   }