X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAAFrequency.java;h=e4f2dfa01a9e41cc2b945dbe5c6e573e85ed0818;hb=be762d8d9c71a7aa3121e845c45911c7192b7827;hp=f8e83796892ef269f6880a87a00199c7b0be4666;hpb=e327ac5df98f528afeb347ac9a79085ad0d0975b;p=jalview.git

diff --git a/src/jalview/analysis/AAFrequency.java b/src/jalview/analysis/AAFrequency.java
index f8e8379..e4f2dfa 100755
--- a/src/jalview/analysis/AAFrequency.java
+++ b/src/jalview/analysis/AAFrequency.java
@@ -151,10 +151,9 @@ public class AAFrequency
                   "WARNING: Consensus skipping null sequence - possible race condition.");
           continue;
         }
-        char[] seq = sequences[row].getSequence();
-        if (seq.length > column)
+        if (sequences[row].getLength() > column)
         {
-          char c = seq[column];
+          char c = sequences[row].getCharAt(column);
           residueCounts.add(c);
           if (Comparison.isNucleotide(c))
           {