X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAAFrequency.java;h=ffa413b92adec44e3b49fb918d69f0bdd2640e63;hb=86d3fd6471ca878388df6abb2b01e4fe305b583a;hp=0e055e450a3ae6983946062d4e28bf56c39ab551;hpb=679e63aab1a22d128bf429a07514eb15f8b288e1;p=jalview.git

diff --git a/src/jalview/analysis/AAFrequency.java b/src/jalview/analysis/AAFrequency.java
index 0e055e4..ffa413b 100755
--- a/src/jalview/analysis/AAFrequency.java
+++ b/src/jalview/analysis/AAFrequency.java
@@ -328,11 +328,12 @@ public class AAFrequency
         return;
       }
 
-      final int gapped = profile.getGapped();
+      final int gapped = profile.getNonGapped();
 
       String description = String.valueOf(gapped);
 
-      consensus.annotations[i] = new Annotation("", description, '0',
+      consensus.annotations[i] = new Annotation(description, description,
+              '\0',
               gapped);
     }
   }