X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAlignSeq.java;h=1b2578ec951ce3993d929cecaa37a66e9d1c5391;hb=48031596c9dbc28c47dad924bb53ce5e5d67f6bf;hp=15ea2fcb94cb6b70db80f9929b493d1561a12c5a;hpb=427421de47dacacac55ac29deca78e2f0a1c5408;p=jalview.git

diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index 15ea2fc..1b2578e 100755
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -561,7 +561,7 @@ public class AlignSeq
         }
       }
 
-      output.append(NEWLINE);// .append(NEWLINE);
+      output.append(NEWLINE).append(NEWLINE);
     }
 
     pid = pid / (aseq1.length - count) * 100;