X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAlignSeq.java;h=2ef1c766fd3603ec72fdfbb6845b9d56c1a17fdd;hb=c16f0cbe6b789e03e064804f426fbc4399f39b44;hp=ba7e520e4be08450e63f262e892dbb8a41cfb007;hpb=0703daae05998509e4f5b301224c61ccec3b77e2;p=jalview.git

diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index ba7e520..2ef1c76 100755
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -1155,7 +1155,8 @@ public class AlignSeq
           }
           if (sq.getAnnotation() != null && sq.getAnnotation().length > 0)
           {
-            annotations.addAll(inspos, Arrays.asList(sq.getAnnotation()));
+            annotations.addAll(inspos == -1 ? annotations.size() : inspos,
+                    Arrays.asList(sq.getAnnotation()));
           }
         }
       }