X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAlignmentSorter.java;fp=src%2Fjalview%2Fanalysis%2FAlignmentSorter.java;h=1801674431aa4c5ac04ae6d6adbe73aec4aa0241;hb=4a28fee3e0c129a01268d26e1396b045bd893fb8;hp=b0373366166692a6032455e38775f935e24489fd;hpb=6ca8a32d88328b8f2162512f41c657c87e131045;p=jalview.git diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java index b037336..1801674 100755 --- a/src/jalview/analysis/AlignmentSorter.java +++ b/src/jalview/analysis/AlignmentSorter.java @@ -453,8 +453,8 @@ public class AlignmentSorter if (tmp.size() != nSeq) { - jalview.bin.Console.errPrintln("WARNING: tmp.size()=" + tmp.size() + " != nseq=" - + nSeq + jalview.bin.Console.errPrintln("WARNING: tmp.size()=" + tmp.size() + + " != nseq=" + nSeq + " in getOrderByTree - tree contains sequences not in alignment"); } } @@ -847,7 +847,8 @@ public class AlignmentSorter int featureCount = feats[i] == null ? 0 : ((SequenceFeature[]) feats[i]).length; scores[i] = featureCount; - // jalview.bin.Console.errPrintln("Sorting on Density: seq "+seqs[i].getName()+ + // jalview.bin.Console.errPrintln("Sorting on Density: seq + // "+seqs[i].getName()+ // " Feats: "+featureCount+" Score : "+scores[i]); } QuickSort.sortByDouble(scores, seqs, sortByFeatureAscending);