X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAlignmentSorter.java;h=4f7f2e2fefe06f88801fb3d98349790a0c039c4f;hb=e1e98ff6e24e5f26f07ab94cdd94799891662319;hp=2fad332458ff5f63f5a3f7d4bdc3b28a180e6006;hpb=be32c14cd8e48fe0a207cd7030cb9cd46f894678;p=jalview.git

diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java
index 2fad332..4f7f2e2 100755
--- a/src/jalview/analysis/AlignmentSorter.java
+++ b/src/jalview/analysis/AlignmentSorter.java
@@ -129,7 +129,7 @@ public class AlignmentSorter
       seqs[i] = align.getSequenceAt(i);
     }
 
-    QuickSort.sort(scores, seqs);
+    QuickSort.sortFloat(scores, seqs);
 
     setReverseOrder(align, seqs);
   }
@@ -268,7 +268,7 @@ public class AlignmentSorter
       length[i] = (seqs[i].getEnd() - seqs[i].getStart());
     }
 
-    QuickSort.sort(length, seqs);
+    QuickSort.sortFloat(length, seqs);
 
     if (sortLengthAscending)
     {
@@ -607,7 +607,7 @@ public class AlignmentSorter
               .floatValue();
     }
 
-    jalview.util.QuickSort.sort(ids, alignment);
+    jalview.util.QuickSort.sortFloat(ids, alignment);
   }
 
   /**
@@ -674,7 +674,7 @@ public class AlignmentSorter
       }
     }
 
-    jalview.util.QuickSort.sort(scores, seqs);
+    jalview.util.QuickSort.sortDouble(scores, seqs);
     if (lastSortByScore != scoreLabel)
     {
       lastSortByScore = scoreLabel;
@@ -905,7 +905,7 @@ public class AlignmentSorter
         }
       }
 
-      jalview.util.QuickSort.sort(scores, seqs);
+      jalview.util.QuickSort.sortDouble(scores, seqs);
     }
     else if (method == FEATURE_DENSITY)
     {
@@ -922,7 +922,7 @@ public class AlignmentSorter
         // System.err.println("Sorting on Density: seq "+seqs[i].getName()+
         // " Feats: "+nf+" Score : "+scores[i]);
       }
-      jalview.util.QuickSort.sort(scores, seqs);
+      jalview.util.QuickSort.sortDouble(scores, seqs);
     }
     else
     {