X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAlignmentSorter.java;h=bf18b70e69440be632de857667494430165842a7;hb=083196ff5de0d570ee70420a15aa6ff1c2dd03bf;hp=c80c3260c85a7a0d7b9c8d98ddc76b08660f49b1;hpb=9d1a374a20f3e2e74b5cec5d12b569121d8adbe5;p=jalview.git

diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java
index c80c326..bf18b70 100755
--- a/src/jalview/analysis/AlignmentSorter.java
+++ b/src/jalview/analysis/AlignmentSorter.java
@@ -121,7 +121,7 @@ public class AlignmentSorter
             tmp.addElement(seqs[i]);
         }
 
-        algn.clear();
+        algn.removeAllElements();
         //User may have hidden seqs, then clicked undo or redo
         for (int i = 0; i < tmp.size(); i++)
         {